Mercurial > repos > davidvanzessen > shm_csr

view change_o/select_first_in_clone.r @ 83:729738462297 draft

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"planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
author rhpvorderman
date Wed, 15 Sep 2021 12:24:06 +0000
parents 6cd12c71c3d3
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args <- commandArgs(trailingOnly = TRUE)

input.file = args[1]
output.file = args[2]

print("select_in_first_clone.r")
print(input.file)
print(output.file)

input = read.table(input.file, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="")

input = input[!duplicated(input$CLONE),]

names(input)[1] = "Sequence.ID"

write.table(input, output.file, quote=F, sep="\t", row.names=F, col.names=T, na="")