Mercurial > repos > davidvanzessen > shm_csr
view change_o/makedb.sh @ 88:a84ac3ee87e1 draft
"planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
author | rhpvorderman |
---|---|
date | Wed, 27 Oct 2021 12:32:21 +0000 |
parents | a103134ee6e0 |
children |
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#!/bin/bash dir="$(cd "$(dirname "$0")" && pwd)" input=$1 noparse=$2 scores=$3 regions=$4 output=$5 if [ "true" == "$noparse" ] ; then noparse="--noparse" else noparse="" fi if [ "true" == "$scores" ] ; then scores="--scores" else scores="" fi if [ "true" == "$regions" ] ; then regions="--regions" else regions="" fi mkdir $PWD/outdir echo "makedb: $PWD/outdir" MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions mv $PWD/outdir/output_db-pass.tab $output rm -rf $PWD/outdir/