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view change_o/select_first_in_clone.r @ 65:dc06e94bc1e3 draft

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author davidvanzessen
date Wed, 06 Dec 2017 09:55:37 -0500
parents 6cd12c71c3d3
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args <- commandArgs(trailingOnly = TRUE)

input.file = args[1]
output.file = args[2]

print("select_in_first_clone.r")
print(input.file)
print(output.file)

input = read.table(input.file, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="")

input = input[!duplicated(input$CLONE),]

names(input)[1] = "Sequence.ID"

write.table(input, output.file, quote=F, sep="\t", row.names=F, col.names=T, na="")