# HG changeset patch
# User davidvanzessen
# Date 1481900623 18000
# Node ID 43d182135230ba2aefadff6637776761dbaad8e8
# Parent  744e5e2e35566d72df863656bcb635f0e6eb1e2d
Uploaded

diff -r 744e5e2e3556 -r 43d182135230 wrapper.sh
--- a/wrapper.sh	Fri Dec 16 10:00:10 2016 -0500
+++ b/wrapper.sh	Fri Dec 16 10:03:43 2016 -0500
@@ -73,16 +73,16 @@
 
 	mkdir $outdir/new_IMGT
 
-	cat `find $PWD/files/ -name "1_*"` > "$outdir/new_IMGT/1_Summary.txt"
-	cat `find $PWD/files/ -name "2_*"` > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt"
-	cat `find $PWD/files/ -name "3_*"` > "$outdir/new_IMGT/3_Nt-sequences.txt"
-	cat `find $PWD/files/ -name "4_*"` > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt"
-	cat `find $PWD/files/ -name "5_*"` > "$outdir/new_IMGT/5_AA-sequences.txt"
-	cat `find $PWD/files/ -name "6_*"` > "$outdir/new_IMGT/6_Junction.txt"
-	cat `find $PWD/files/ -name "7_*"` > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt"
-	cat `find $PWD/files/ -name "8_*"` > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt"
-	cat `find $PWD/files/ -name "9_*"` > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt"
-	cat `find $PWD/files/ -name "10_*"` > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt"
+	cat "`find $PWD/files/ -name "1_*"`" > "$outdir/new_IMGT/1_Summary.txt"
+	cat "`find $PWD/files/ -name "2_*"`" > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt"
+	cat "`find $PWD/files/ -name "3_*"`" > "$outdir/new_IMGT/3_Nt-sequences.txt"
+	cat "`find $PWD/files/ -name "4_*"`" > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt"
+	cat "`find $PWD/files/ -name "5_*"`" > "$outdir/new_IMGT/5_AA-sequences.txt"
+	cat "`find $PWD/files/ -name "6_*"`" > "$outdir/new_IMGT/6_Junction.txt"
+	cat "`find $PWD/files/ -name "7_*"`" > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt"
+	cat "`find $PWD/files/ -name "8_*"`" > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt"
+	cat "`find $PWD/files/ -name "9_*"`" > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt"
+	cat "`find $PWD/files/ -name "10_*"`" > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt"
 
 	mkdir $outdir/new_IMGT_IGA
 	cp $outdir/new_IMGT/* $outdir/new_IMGT_IGA