# HG changeset patch
# User davidvanzessen
# Date 1481900410 18000
# Node ID 744e5e2e35566d72df863656bcb635f0e6eb1e2d
# Parent  96c1276ceefee0a5248ee192381adb747727bd3e
Uploaded

diff -r 96c1276ceefe -r 744e5e2e3556 wrapper.sh
--- a/wrapper.sh	Fri Dec 16 09:53:09 2016 -0500
+++ b/wrapper.sh	Fri Dec 16 10:00:10 2016 -0500
@@ -41,13 +41,13 @@
 	tar -xJf $input -C "$PWD/files/$title"
 fi
 
-cat `find $PWD/files/ -name "1_*"` > $PWD/summary.txt
-cat `find $PWD/files/ -name "3_*"` > $PWD/sequences.txt
-cat `find $PWD/files/ -name "5_*"` > $PWD/aa.txt
-cat `find $PWD/files/ -name "6_*"` > $PWD/junction.txt
-cat `find $PWD/files/ -name "7_*"` > $PWD/mutationanalysis.txt
-cat `find $PWD/files/ -name "8_*"` > $PWD/mutationstats.txt
-cat `find $PWD/files/ -name "10_*"` > $PWD/hotspots.txt
+cat "`find $PWD/files/ -name "1_*"`" > $PWD/summary.txt
+cat "`find $PWD/files/ -name "3_*"`" > $PWD/sequences.txt
+cat "`find $PWD/files/ -name "5_*"`" > $PWD/aa.txt
+cat "`find $PWD/files/ -name "6_*"`" > $PWD/junction.txt
+cat "`find $PWD/files/ -name "7_*"`" > $PWD/mutationanalysis.txt
+cat "`find $PWD/files/ -name "8_*"`" > $PWD/mutationstats.txt
+cat "`find $PWD/files/ -name "10_*"`" > $PWD/hotspots.txt
 
 if [[ ${#BLASTN_DIR} -ge 5 ]] ; then
 	echo "On server, using BLASTN_DIR env: ${BLASTN_DIR}"