# HG changeset patch # User davidvanzessen # Date 1491983553 14400 # Node ID b66e8946ba756853079c247c813385baf8ec116b # Parent 716622f5bb4fcd1a66a7038199b20881e7790096 Uploaded diff -r 716622f5bb4f -r b66e8946ba75 sequence_overview.r --- a/sequence_overview.r Tue Apr 11 08:10:55 2017 -0400 +++ b/sequence_overview.r Wed Apr 12 03:52:33 2017 -0400 @@ -70,7 +70,7 @@ res = paste(res, "") } -cat("
Please note that this tab is based on all sequences before filter unique sequences and the remove duplicates based on filters are applied. In this table only sequences according more than once are included.
", file=main.html, append=F) +cat("
Please note that this tab is based on all sequences before filter unique sequences and the remove duplicates based on filters are applied. In this table only sequences occuring more than once are included.
", file=main.html, append=F) cat("", file=main.html, append=T) if(empty.region.filter == "leader"){ diff -r 716622f5bb4f -r b66e8946ba75 shm_clonality.htm --- a/shm_clonality.htm Tue Apr 11 08:10:55 2017 -0400 +++ b/shm_clonality.htm Wed Apr 12 03:52:33 2017 -0400 @@ -134,7 +134,7 @@

Please note that this tab is based on all sequences before filter unique sequences and the remove duplicates based on -filters are applied. In this table only sequences according more than once are +filters are applied. In this table only sequences occuring more than once are included.

diff -r 716622f5bb4f -r b66e8946ba75 wrapper.sh --- a/wrapper.sh Tue Apr 11 08:10:55 2017 -0400 +++ b/wrapper.sh Wed Apr 12 03:52:33 2017 -0400 @@ -673,7 +673,7 @@ echo "" >> $output echo "" >> $output -echo "" >> $output +echo "" >> $output echo "" >> $output echo "" >> $output echo "" >> $output
Transition Tables
The data for the 'all' transition plotDownload
The data for the 'IGA' transition plotDownload
The data for the 'IGA' transition plotDownload
The data for the 'IGA1' transition plotDownload
The data for the 'IGA2' transition plotDownload
The data for the 'IGG' transition plotDownload