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annotate test-data/Kleborate_results.txt @ 37:89436e9c311d draft

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author dazeone
date Tue, 05 Apr 2022 15:02:08 +0000
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1 strain species species_match contig_count N50 largest_contig total_size ambiguous_bases QC_warnings ST virulence_score resistance_score num_resistance_classes num_resistance_genes Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_locus_problems K_locus_confidence K_locus_identity K_locus_missing_genes O_locus O_type O_locus_problems O_locus_confidence O_locus_identity O_locus_missing_genes AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits Chr_ST gapA infB mdh pgi phoE rpoB tonB ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA clbA clbB clbC clbD clbE clbF clbG clbH clbI clbL clbM clbN clbO clbP clbQ iucA iucB iucC iucD iutA iroB iroC iroD iroN rmpA rmpD rmpC spurious_virulence_hits
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2 KP012_S64.scfd Klebsiella quasipneumoniae subsp. similipneumoniae strong 76 180485 526212 5325365 yes (413) ambiguous_bases ST1504 0 0 0 0 - 0 - 0 - 0 - 0 - 0 - - KL125 ?* Good 90.54% O5 O5 * High 94.05% - - - - - - - - - - - - - - - - - OKP-B-6*? - - - - - - ST1504 42 23 135 110 193 38 249 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -