# HG changeset patch
# User dazeone
# Date 1615906466 0
# Node ID 4ba9ec79832841b0dcf5fd2bd292980ee56af24f
# Parent  7e6272eb8037adede113388774560b37a7300c2a
Deleted selected files

diff -r 7e6272eb8037 -r 4ba9ec798328 kleborate.xml
--- a/kleborate.xml	Tue Mar 16 14:42:09 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,56 +0,0 @@
-<tool id="kleboratetool" name="Kleborate" version="0.1.0">
-  <description>Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae</description>
- <requirements>
-  <requirement type="package" version="2.0.4">Kleborate</requirement>
-  <requirement type="package" version="0.5.1">kaptive</requirement>
-  <requirement type="package" version="2.10.1">blast</requirement>
-   <requirement type="package" version="1.78">biopython</requirement>
-</requirements>
-
-  <command>kleborate -a `echo $input | tr ',' ' '` $r $kaptive_k $kaptive_o -o $output </command>
- 
-  <inputs>
-	  <param format="fasta" name="input" type="data" label="Genome fasta file : " multiple="true" display="checkboxes"/>
-	 
-	  <param name="r" type="select" label="Turn on resistance genes screening (default: no resistance gene screening):">
-            <option value="">no</option>
-            <option value="-r">yes</option>
-          </param>
-
-          <param name="kaptive_k" type="select" label="Turn on Kaptive screening of K loci (default: do not run Kaptive for K loci):">
-	    <option value="">no</option>
-	    <option value="--kaptive_k">yes</option>
-          </param>
-	
-          <param name="kaptive_o" type="select" label="Turn on Kaptive screening of O loci (default: do not run Kaptive for O loci):">
-            <option value="">no</option>
-            <option value="--kaptive_o">yes</option>
-    </param> 
-	   
- </inputs>
-
- <outputs>	 
-    <data format="tabular" name="output" />
- </outputs>
-
- <tests>
-    <test>
-	    <param name="input" value="KP011_S63.scfd.fasta " />
-	    <param name="input" value="KP012_S64.scfd.fasta " />
-        <param name="r" value="-r"/>
-	<param name="kaptive_k" value="--kaptive_k"/>
-	<param name="kaptive_o" value=""/>
-        <output name="output" file="Kleborate_results.txt" />
-    </test>
-</tests>
-
-  <help>
-For full documentation, please go to the Kleborate wiki (https://github.com/katholt/Kleborate/wiki)
-  </help>
-  <citations>
-	  <citation type="doi">10.1101/2020.12.14.422303</citation>
-	        </citations> 
-</tool>
-
-
-