--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resfinder/cge/phenotype2genotype/dbhit.py	Wed Dec 08 01:46:07 2021 +0000
@@ -0,0 +1,35 @@
+#!/usr/bin/env python3
+
+
+class DBHit(object):
+    """ A DBHit describes an alignment of a feature to a reference/template.
+        The db variable should be used to describe which database the alignment
+        in question was done against. For example 'resfinder'
+
+        The match_category variable stores one of the integers:
+            1: Match < 100% identity AND match_length < ref_length
+            2: Match < 100% identity AND match_length == ref_length
+            3: Match == 100% identity AND match_length == ref_length
+    """
+    def __init__(self, name, identity, match_length, ref_length, start_ref,
+                 end_ref, acc, depth=None, db=None):
+        self.name = name
+        self.identity = float(identity)
+        if(match_length == "NA"):
+            self.match_length = None
+        else:
+            self.match_length = int(match_length)
+        self.ref_length = int(ref_length)
+        self.start_ref = int(start_ref)
+        self.end_ref = int(end_ref)
+        self.acc = acc
+        self.depth = depth
+        self.db = db
+
+        if(self.match_length is not None
+           and self.ref_length != self.match_length):
+            self.match_category = 1
+        elif(self.identity < 100.0):
+            self.match_category = 2
+        else:
+            self.match_category = 3