Mercurial > repos > dcouvin > resfinder

diff resfinder/scripts/wdl/input.json @ 0:a16d245332d6 draft default tip

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author dcouvin
date Wed, 08 Dec 2021 01:46:07 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resfinder/scripts/wdl/input.json	Wed Dec 08 01:46:07 2021 +0000
@@ -0,0 +1,14 @@
+{
+    "Resistance.inputSamplesFile": "/home/projects/cge/people/rkmo/delme/res_input.tsv",
+    "Resistance.outputDir": "/home/projects/cge/people/rkmo/delme/",
+    "Resistance.geneCov": 0.6,
+    "Resistance.geneID": 0.8,
+    "Resistance.pointCov": 0.6,
+    "Resistance.pointID": 0.8,
+    "Resistance.python": "python3",
+    "Resistance.kma": "/home/projects/cge/apps/resfinder/resfinder/cge/kma/kma",
+    "Resistance.blastn": "blastn",
+    "Resistance.resfinder": "/home/projects/cge/apps/resfinder/resfinder/run_resfinder.py",
+    "Resistance.resDB": "/home/projects/cge/apps/resfinder/resfinder/db_resfinder",
+    "Resistance.pointDB": "/home/projects/cge/apps/resfinder/resfinder/db_pointfinder"
+}