diff resfinder/amr_abbreviations.md @ 0:a16d245332d6 draft default tip

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author dcouvin
date Wed, 08 Dec 2021 01:46:07 +0000
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+# Antimicrobial Abbreviations
+
+In ResFinder results where antimicrobial abbreviations are used, it will use the [EUCAST System for Antimicrobial Abbreviations](https://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Disk_test_documents/Disk_abbreviations/EUCAST_system_for_antimicrobial_abbreviations.pdf).
+
+## Abbreviations
+
+| Antimicrobial                 | Abbreviation |
+|-------------------------------|--------------|
+| Amikacin                      | AMI          |
+| Amoxicillin                   | AMO          |
+| Amoxicillin-clavulanate       | AMC          |
+| Ampicillin                    | AMP          |
+| Ampicillin-sulbactam          | AMS          |
+| Avibactam                     | AVI          |
+| Azithromycin                  | AZI          |
+| Aztreonam                     | AZT          |
+| Benzylpenicillin              | BEN          |
+| Cefaclor                      | CCL          |
+| Cefadroxil                    | CDR          |
+| Cefalexin                     | CLE          |
+| Cefazolin                     | CZO          |
+| Cefepime                      | CEP          |
+| Cefixime                      | CIX          |
+| Cefotaxime                    | CTA          |
+| Cefoxitin                     | CXI          |
+| Cefpodoxime                   | CPO          |
+| Ceftaroline                   | CTL          |
+| Ceftazidime                   | CTZ          |
+| Ceftazidime-avibactam         | CTV          |
+| Ceftibuten                    | CTI          |
+| Ceftiofur                     | CTF          |
+| Ceftobiprole                  | CTO          |
+| Ceftolozane-tazobactam        | CTT          |
+| Ceftriaxone                   | CTR          |
+| Cefuroxime                    | CUR          |
+| Chloramphenicol               | CHL          |
+| Ciprofloxacin                 | CIP          |
+| Clarithromycin                | CLA          |
+| Clavulanic acid               | CLV          |
+| Clindamycin                   | CLI          |
+| Cloxacillin                   | CLO          |
+| Colistin                      | COL          |
+| Dalbavancin                   | DAL          |
+| Daptomycin                    | DAP          |
+| Dicloxacillin                 | DIC          |
+| Difloxacin                    | DIF          |
+| Doripenem                     | DOR          |
+| Doxycyline                    | DOX          |
+| Enrofloxacin                  | ENR          |
+| Ertapenem                     | ERT          |
+| Erythromycin                  | ERY          |
+| Florfenicol                   | FLO          |
+| Flucloxacillin                | FLU          |
+| Fosfomycin                    | FOS          |
+| Fusidic acid                  | FUS          |
+| Gamithromycin                 | GAM          |
+| Gentamicin                    | GEN          |
+| Gepotidacin                   | GEP          |
+| Imipenem                      | IMI          |
+| Kanamycin                     | KAN          |
+| Levofloxacin                  | LEV          |
+| Linezolid                     | LIN          |
+| Marbofloxacin                 | MAR          |
+| Mecillinam                    | MEC          |
+| Meropenem                     | MER          |
+| Methicillin                   | MEH          |
+| Metronidazole                 | MET          |
+| Minocycline                   | MIN          |
+| Moxifloxacin                  | MOX          |
+| Mupirocin                     | MUP          |
+| Nalidixic acid                | NAL          |
+| Netilmicin                    | NET          |
+| Nitrofurantoin                | NIT          |
+| Norfloxacin                   | NOR          |
+| Novobiocin                    | NOV          |
+| Ofloxacin                     | OFL          |
+| Orbifloxacin                  | ORB          |
+| Oritavancin                   | ORI          |
+| Oxacillin                     | OXA          |
+| Oxytetracycline               | OXY          |
+| Pefloxacin                    | PEF          |
+| Phenethicillin                | PHN          |
+| Phenoxymethypenicillin        | PHE          |
+| Pipemidic acid                | PIE          |
+| Piperacillin                  | PIP          |
+| Piperacillin-tazobactam       | PIT          |
+| Pirlimycin                    | PIR          |
+| Pradofloxacin                 | PRA          |
+| Quinupristin-dalfopristin     | QUD          |
+| Relabactam                    | REL          |
+| Retapamulin                   | RET          |
+| Rifampicin                    | RIF          |
+| Roxithromycin                 | ROX          |
+| Spectinomycin                 | SPE          |
+| Spectinomycin                 | SPE          |
+| Streptomycin                  | STR          |
+| Streptomycin                  | STR          |
+| Sulbactam                     | SUL          |
+| Sulbactam                     | SUL          |
+| Sulfamethoxazole              | SME          |
+| Sulfamethoxazole              | SME          |
+| Sulfathiazole                 | STH          |
+| Sulfathiazole                 | STH          |
+| Sulfisoxazole                 | SIS          |
+| Sulfisoxazole                 | SIS          |
+| Tazobactam                    | TAZ          |
+| Tazobactam                    | TAZ          |
+| Tedizolid                     | TED          |
+| Tedizolid                     | TED          |
+| Teicoplanin                   | TEI          |
+| Teicoplanin                   | TEI          |
+| Telavancin                    | TEL          |
+| Telavancin                    | TEL          |
+| Telithromycin                 | TEH          |
+| Telithromycin                 | TEH          |
+| Tetracycline                  | TET          |
+| Tetracycline                  | TET          |
+| Tiamulin                      | TIA          |
+| Tiamulin                      | TIA          |
+| Ticarcillin                   | TIC          |
+| Ticarcillin-clavulanate       | TIL          |
+| Tigecycline                   | TIG          |
+| Tildipirosin                  | TID          |
+| Tilmicosin                    | TIM          |
+| Tobramycin                    | TOB          |
+| Trimethoprim                  | TRI          |
+| Trimethoprim-sulfamethoxazole | TRS          |
+| Tulathromycin                 | TUL          |
+| Vaborbactam                   | VAB          |
+| Valnemulin                    | VAL          |
+| Vancomycin                    | VAN          |