Mercurial > repos > dcouvin > resfinder4

annotate resfinder/scripts/env_variables.txt @ 0:55051a9bc58d draft default tip

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author dcouvin
date Mon, 10 Jan 2022 20:06:07 +0000
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dcouvin
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1 export CGE_PYTHON="python3"
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dcouvin
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2 export CGE_KMA="/media/sf_nextcloud/Scripts-CGE/resfinder/cge/kma/kma"
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dcouvin
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3 export CGE_BLASTN="blastn"
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dcouvin
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4 export CGE_RESFINDER="/media/sf_nextcloud/Scripts-CGE/resfinder/run_resfinder.py"
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dcouvin
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5 export CGE_RESFINDER_RESGENE_DB="/media/sf_nextcloud/Scripts-CGE/resfinder/db_resfinder"
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dcouvin
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6 export CGE_RESFINDER_RESPOINT_DB="/media/sf_nextcloud/Scripts-CGE/resfinder/db_pointfinder"
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dcouvin
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7 export CGE_RESFINDER_DISINF_DB="/media/sf_nextcloud/Scripts-CGE/resfinder/db_disinfinder"
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dcouvin
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8 export CGE_RESFINDER_GENE_COV="0.6"
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dcouvin
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9 export CGE_RESFINDER_GENE_ID="0.8"
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dcouvin
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10 export CGE_RESFINDER_POINT_COV="0.6"
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dcouvin
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11 export CGE_RESFINDER_POINT_ID="0.8"