view SRArunInfo.xml @ 1:d22e2cd2dab5 draft default tip

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author dcouvin
date Fri, 03 Sep 2021 23:08:48 +0000
parents 1bc09d59c6d7
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<tool id="sra_run_info" name="SRA run Info" version="1.0">
  <description>Provides information from SRR/ERR run accessions</description>
<requirements>
  <requirement type="package" version="1.20.3">wget</requirement>
</requirements>
    <command detect_errors="aggressive"><![CDATA[

	perl ${__tool_directory__}/SRArunInfo.pl $input $output

	]]></command>



 <inputs>
    <param name="input" type="text" area="true" value='SRR7693877,SRR9850824,SRR9850830' label="SRR/ERR accession number" help="Comma separated list of IDs (without spaces between IDs)"/>
    
  <!--<param format="tabular" name="input_files" type="data" multiple="true" label="Annotation files"/>-->
 </inputs>

 <outputs>
	 <data format="tabular" name="output" label="Summary file"/>
	 <!--<data format="tabular" name="output2" label="HTML file"/>-->
 </outputs>

 <help><![CDATA[
SRArunInfo.pl is a Perl script allowing to provide information from SRR/ERR run accessions

This script belongs to the getSequenceInfo supplementary tools

Example of input: SRR7693877,SRR9850824,SRR9850830

- GitHub: https://github.com/karubiotools/getSequenceInfo/tree/master/supplementary_tools
]]>
 </help>


</tool>