Mercurial > repos > dcouvin > sraruninfo
view SRArunInfo.xml @ 1:d22e2cd2dab5 draft default tip
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author | dcouvin |
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date | Fri, 03 Sep 2021 23:08:48 +0000 |
parents | 1bc09d59c6d7 |
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<tool id="sra_run_info" name="SRA run Info" version="1.0"> <description>Provides information from SRR/ERR run accessions</description> <requirements> <requirement type="package" version="1.20.3">wget</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ perl ${__tool_directory__}/SRArunInfo.pl $input $output ]]></command> <inputs> <param name="input" type="text" area="true" value='SRR7693877,SRR9850824,SRR9850830' label="SRR/ERR accession number" help="Comma separated list of IDs (without spaces between IDs)"/> <!--<param format="tabular" name="input_files" type="data" multiple="true" label="Annotation files"/>--> </inputs> <outputs> <data format="tabular" name="output" label="Summary file"/> <!--<data format="tabular" name="output2" label="HTML file"/>--> </outputs> <help><![CDATA[ SRArunInfo.pl is a Perl script allowing to provide information from SRR/ERR run accessions This script belongs to the getSequenceInfo supplementary tools Example of input: SRR7693877,SRR9850824,SRR9850830 - GitHub: https://github.com/karubiotools/getSequenceInfo/tree/master/supplementary_tools ]]> </help> </tool>