# HG changeset patch
# User deepakj
# Date 1454500889 18000
# Node ID c557bd906e0834f8c0eb8572fae9cb9d40353654
# Parent  c59b266c12469fa43bb8627fcf81ed1f0ee13abe
Uploaded

diff -r c59b266c1246 -r c557bd906e08 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Feb 03 07:01:29 2016 -0500
@@ -0,0 +1,563 @@
+<?xml version="1.0"?>
+<tool_dependency>
+   <package name="R" version="3.2.1">
+        <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="caret-tools" version="1.0.0">
+        <install version="1.0">
+          
+          
+        <actions>
+           <action type="set_environment_for_install">
+                    <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.2.1" />
+                    </repository>
+         </action>
+               
+                <action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Rcpp_0.12.1.tar.gz?raw=true</action>
+                <action type="shell_command">R CMD INSTALL Rcpp_0.12.1.tar.gz?raw=true</action>
+                 <action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3gf $R_ROOT_DIR/lib/libblas.so.3</action>
+                 <action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3 $R_ROOT_DIR/lib/R/lib</action>
+                 <action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Matrix_1.2-2.tar.gz?raw=true</action>
+                <action type="shell_command">R CMD INSTALL Matrix_1.2-2.tar.gz?raw=true</action>
+                
+                 <action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/RcppEigen_0.3.2.5.0.tar.gz?raw=true</action>
+                 <action type="shell_command">R CMD INSTALL RcppEigen_0.3.2.5.0.tar.gz?raw=true</action>
+                 
+                 <action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/minqa_1.2.4.tar.gz?raw=true</action>
+                 <action type="shell_command">R CMD INSTALL minqa_1.2.4.tar.gz?raw=true</action>
+                 <action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/nloptr_1.0.4.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL nloptr_1.0.4.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/lme4_1.1-9.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL lme4_1.1-9.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/e1071_1.6-7.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL e1071_1.6-7.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/TeachingDemos_2.9.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL TeachingDemos_2.9.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/plotrix_3.5-12.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL plotrix_3.5-12.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/plotmo_3.1.4.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL plotmo_3.1.4.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/earth_4.4.2.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL earth_4.4.2.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/fastICA_1.2-0.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL fastICA_1.2-0.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/iterators_1.0.7.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL iterators_1.0.7.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/foreach_1.4.2.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL foreach_1.4.2.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/gam_1.12.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL gam_1.12.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/numDeriv_2014.2-1.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL numDeriv_2014.2-1.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/lava_1.4.1.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL lava_1.4.1.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/prodlim_1.5.1.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL prodlim_1.5.1.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/rpart_4.1-10.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL rpart_4.1-10.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/ipred_0.9-5.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL ipred_0.9-5.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/kernlab_0.9-22.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL kernlab_0.9-22.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/combinat_0.0-8.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL combinat_0.0-8.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/klaR_0.6-12.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL klaR_0.6-12.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/ellipse_0.3-8.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL ellipse_0.3-8.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/mda_0.4-7.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL mda_0.4-7.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/mlbench_2.1-1.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL mlbench_2.1-1.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/lattice_0.20-33.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL lattice_0.20-33.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/zoo_1.7-12.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL zoo_1.7-12.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/sandwich_2.3-3.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL sandwich_2.3-3.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/strucchange_1.5-1.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL strucchange_1.5-1.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/modeltools_0.2-21.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL modeltools_0.2-21.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/mvtnorm_1.0-3.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL mvtnorm_1.0-3.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/coin_1.0-24.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL coin_1.0-24.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/party_1.0-18.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL party_1.0-18.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/partykit_1.0-3.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL partykit_1.0-3.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/pls_2.4-3.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL pls_2.4-3.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/plyr_1.8.3.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL plyr_1.8.3.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/pROC_1.8.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL pROC_1.8.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL proxy_0.4-15.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/randomForest_4.6-10.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL randomForest_4.6-10.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL RANN_2.5.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL spls_2.2-1.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL subselect_0.12-5.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL pamr_1.55.tar.gz?raw=true</action>
+<action type="download_file">https://github.com/Deep2106/R-3.1.3caret/blob/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/superpc_1.09.tar.gz?raw=true</action>
+<action type="shell_command">R CMD INSTALL superpc_1.09.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL stringi_0.5-5.tar.gz?raw=true</action>
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+<action type="shell_command">R CMD INSTALL magrittr_1.5.tar.gz?raw=true</action>
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+                 
+                 
+                 
+                
+       </actions>
+                   
+           
+           
+           
+        </install>
+        <readme>
+caret tools installed successfully.
+        </readme>
+    </package>
+    
+</tool_dependency>