Mercurial > repos > dereeper > admixture
comparison admixture.sh @ 0:781ac6e7a3a1 draft
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| author | dereeper |
|---|---|
| date | Fri, 20 Feb 2015 10:09:18 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:781ac6e7a3a1 |
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| 1 #!/bin/bash | |
| 2 input=$1 | |
| 3 outputs=$2 | |
| 4 logs=$3 | |
| 5 best_k_output=$4 | |
| 6 best_k_logfile=$5 | |
| 7 kmin=$6 | |
| 8 kmax=$7 | |
| 9 | |
| 10 directory=`dirname $0` | |
| 11 mkdir tmpdir$$ | |
| 12 cp -rf $input tmpdir$$/input | |
| 13 | |
| 14 /usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory | |
| 15 | |
| 16 mv tmpdir$$/output $best_k_output | |
| 17 mv tmpdir$$/log $best_k_logfile | |
| 18 mv tmpdir$$/outputs.Q $outputs | |
| 19 mv tmpdir$$/logs $logs | |
| 20 | |
| 21 |