Mercurial > repos > dereeper > admixture
view admixture/admixture.sh @ 2:92ddf4f7c0c6 draft
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author | dereeper |
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date | Thu, 02 Jul 2015 04:13:46 -0400 |
parents | |
children | 9f6977aae93a |
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#!/bin/bash bed=$1 fam=$2 bim=$3 outputs=$4 logs=$5 best_k_output=$6 best_k_logfile=$7 kmin=$8 kmax=$9 directory=`dirname $0` mkdir tmpdir$$ cp -rf $bed tmpdir$$/input.bed cp -rf $fam tmpdir$$/input.fam cp -rf $bim tmpdir$$/input.bim /usr/bin/perl $directory/Admixture.pl -i tmpdir$$/input -o $outputs -k $kmin -m $kmax -d tmpdir$$ mv tmpdir$$/output $best_k_output mv tmpdir$$/log $best_k_logfile mv tmpdir$$/outputs.Q $outputs mv tmpdir$$/logs $logs