Mercurial > repos > dereeper > beagle
comparison test-data/Annotated_VCF.vcf @ 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
| author | dereeper |
|---|---|
| date | Tue, 14 Aug 2018 07:59:19 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:a929ef8dea25 |
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| 1 ##fileformat=VCFv4.2 | |
| 2 ##fileDate=20180115 | |
| 3 ##source=PLINKv1.90 | |
| 4 ##contig=<ID=3,length=19999036> | |
| 5 ##INFO=<ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome"> | |
| 6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 7 ##SnpEffVersion="4.0e (build 2014-09-13), by Pablo Cingolani" | |
| 8 ##SnpEffCmd="SnpEff -o vcf -no-downstream -no-upstream myspecies -s /work/GALAXY/galaxy/database/files/071/dataset_71178.dat /work/GALAXY/galaxy/database/files/071/dataset_71176.dat " | |
| 9 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact | Functional_Class | Codon_Change | Amino_Acid_Change| Amino_Acid_length | Gene_Name | Transcript_BioType | Gene_Coding | Transcript_ID | Exon_Rank | Genotype_Number [ | ERRORS | WARNINGS ] )' "> | |
| 10 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' "> | |
| 11 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' "> | |
| 12 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT c88dcbba.0 0b7d031b.0 16ef3c90.0 26863647.0 7f32098d.0 608b0d34.0 46aa9c6a.0 d00c1e13.0 8366125c.0 a358fb3f.0 2a5ee06d.0 df3c89f8.0 78f9e9fe.0 04aca4b5.0 04704bb4.0 5cf82125.0 559cd294.0 98ca16ae.0 1865f890.0 66391666.0 824bd841.0 971d8d35.0 1580b445.0 3476f3f1.0 6fe1d5f1.0 727d7321.0 8a1459b3.0 1a210383.0 2aa697f5.0 a7596568.0 41872470.0 d9a92db4.0 66b6164a.0 5a43ae22.0 6ac8c69b.0 3afe78bc.0 bf19b73d.0 d7e9eece.0 82e8b7f7.0 60121701.0 6cf8dce4.0 3051c486.0 59afa5e3.0 68b91064.0 ae03e236.0 ddaead61.0 aa6cd0c1.0 e1d9a122.0 fb625f89.0 cb0723a4.0 98042619.0 aca14ce9.0 bada3969.0 5efeb5b6.0 fe614ecb.0 bea7cbcf.0 1abb6b2c.0 4506b36e.0 addc58a4.0 f5f3d6ea.0 e1838272.0 d2dd5d08.0 4874cc49.0 a6e508e5.0 61544ce0.0 429e439a.0 522427a2.0 b41ea6b3.0 773db8bf.0 ce7eb496.0 2eafa96f.0 533385bb.0 1f8b989f.0 44fe4cf1.0 07990ed9.0 f40ea464.0 c7913661.0 c54cc672.0 66c5c186.0 c111198a.0 5b45a727.0 de954805.0 2552833e.0 c840a160.0 529e807c.0 1fb8be6d.0 a85f295d.0 cb0c4d54.0 c3b20632.0 3f0e6324.0 178d96de.0 225b17eb.0 99d33763.0 d10e2929.0 8f99b9e2.0 f6801eb5.0 e2606999.0 b308ee1b.0 a7e6bc0f.0 84e1a141.0 bcea78dd.0 e1d1c3b0.0 01a58510.0 9c00ac3a.0 71ad2583.0 ea2ae002.0 bc730b70.0 9c62b49e.0 5da42fd9.0 3b7bddf8.0 45388f1b.0 cd33864f.0 28dd8a58.0 1de0e087.0 07fd6392.0 f8c60a5c.0 25cdd8ae.0 23b0b44c.0 484b2a0f.0 82e17a03.0 be2b0b83.0 260c1d61.0 e30161a0.0 115e701d.0 4c13a3a3.0 08beaab3.0 68f6c96b.0 2d661c20.0 fb2aa5d5.0 2ece01ea.0 e048f5ff.0 ee58d650.0 5872a595.0 5975119a.0 e3fc5497.0 a51b2a39.0 d66638c8.0 a5ef5ab7.0 7d71b69f.0 b4b4df33.0 14d89242.0 9bdaf6eb.0 c949dc7c.0 d4dd88ed.0 8fa373e8.0 eaa3a28a.0 8609fb0e.0 a6d8f1fd.0 be814f56.0 abc6960f.0 832b2be7.0 5776533f.0 3d3f5b4e.0 bc700e39.0 946e0202.0 47c2ea40.0 c86d6702.0 b95ce243.0 2e05f839.0 79ec00de.0 f292fe0a.0 a65ecc2d.0 2b962329.0 718e09f3.0 0a5fbba4.0 89d2c5a0.0 61d7b167.0 2bfcbe44.0 90bc17da.0 65329b91.0 e069425a.0 5325e87e.0 7578b606.0 6fb127b9.0 3b8476cc.0 c8fc9010.0 fd96414a.0 7f0e7041.0 a0c41ad0.0 1e5e8456.0 ab4a346a.0 77bec15a.0 2bca2f34.0 9651d67d.0 9a5569b2.0 b961cc90.0 e42dd51d.0 911f856a.0 53e1db9a.0 e5b216b3.0 18484bd4.0 64f24c90.0 9cbb223a.0 f7e1ce6e.0 9e44e293.0 eac19fb8.0 76f56677.0 87621330.0 dc2cf39b.0 17627a92.0 7126c359.0 c20dfc59.0 cbd6b346.0 f30e146b.0 1510e4aa.0 cf44b628.0 bd7aaa87.0 e8f708a5.0 2b4e06fe.0 3eb8fab5.0 aeed4684.0 328163e1.0 c7aeb39f.0 3e58f34c.0 cc0ef8cf.0 30646147.0 192e24ab.0 5ef1be74.0 71d5fcf4.0 714ac141.0 0f6a67da.0 a796716d.0 a8319fc6.0 93387d96.0 5384be83.0 8fafd383.0 cff871e8.0 2a7724c1.0 773e969e.0 743f41c1.0 1a946dc6.0 9ac72c9e.0 5505a767.0 8cd35626.0 fdd98970.0 86556239.0 44aeff79.0 c7d2513e.0 2a9d8d47.0 39dd7feb.0 c0936cf1.0 5aa7968d.0 73c4fdfb.0 5ae0bd70.0 122a975b.0 2b81cf74.0 9b2223bb.0 bf18cbae.0 16463092.0 7a723d9e.0 c8a73fe7.0 5b144b9c.0 3aa51818.0 4f643bf5.0 3fb62843.0 c0d6eca3.0 43f72773.0 | |
| 13 3 15001183 SNP-3.14999829. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu98Leu/c.294C>A|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctA/ctA|p.Leu76Leu/c.228C>A|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctA/ctA|p.Leu76Leu/c.228C>A|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 14 3 15001469 SNP-3.15000115. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala142Gly/c.425A>G|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala120Gly/c.359A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala120Gly/c.359A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 15 3 15002088 SNP-3.15000734. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||219|c.*219A>G|274|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||219|c.*219A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||219|c.*219A>G|252|LOC_Os03g26210|protein_coding|CODING|LOC_Os03g26210.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 16 3 15002962 SNP-3.15001608. C A . . PR;EFF=synonymous_variant(LOW||Tca/Tca|p.Ser189Ser/c.565G>T|309|LOC_Os03g26220|protein_coding|CODING|LOC_Os03g26220.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 17 3 15006811 SNP-3.15005457. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||2|c.-2C>A|72|LOC_Os03g26229|protein_coding|CODING|LOC_Os03g26229.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 18 3 15008914 SNP-3.15007560. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctT|p.Leu34Leu/c.102G>T|86|LOC_Os03g26240|protein_coding|CODING|LOC_Os03g26240.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 19 3 15009272 SNP-3.15007918. A G . . PR;EFF=intron_variant(MODIFIER|||c.28+154T>C|86|LOC_Os03g26240|protein_coding|CODING|LOC_Os03g26240.1|1|1) GT 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 | |
| 20 3 15009454 SNP-3.15008100. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 21 3 15010303 SNP-3.15008949. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 22 3 15012222 SNP-3.15010868. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 23 3 15013793 SNP-3.15012439. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 24 3 15016928 SNP-3.15015574. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg29His/c.86C>A|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 25 3 15016994 SNP-3.15015640. A G . . PR;EFF=synonymous_variant(LOW||aGg/aGg|p.Arg51Arg/c.152A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 26 3 15017069 SNP-3.15015715. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tGt|p.Ser76Cys/c.227A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 27 3 15017825 SNP-3.15016471. A G . . PR;EFF=intron_variant(MODIFIER|||c.233+750A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|2|1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 28 3 15021297 SNP-3.15019943. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cGc|p.Pro159Arg/c.476A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 29 3 15021415 SNP-3.15020061. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|atA/atG|p.Ile198Met/c.594A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 30 3 15021478 SNP-3.15020124. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val219Val/c.657A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 31 3 15021637 SNP-3.15020283. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala272Ala/c.816A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 32 3 15022555 SNP-3.15021201. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro578Pro/c.1734A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 | |
| 33 3 15022888 SNP-3.15021534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His689Gln/c.2067A>G|827|LOC_Os03g26260|protein_coding|CODING|LOC_Os03g26260.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 34 3 15023579 SNP-3.15022225. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 35 3 15025795 SNP-3.15024441. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 36 3 15029041 SNP-3.15027687. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 37 3 15029887 SNP-3.15028533. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cGt|p.Leu65Arg/c.194A>G|84|LOC_Os03g26280|protein_coding|CODING|LOC_Os03g26280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 38 3 15030098 SNP-3.15028744. A G . . PR;EFF=intron_variant(MODIFIER|||c.207+198A>G|84|LOC_Os03g26280|protein_coding|CODING|LOC_Os03g26280.1|1|1) GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 39 3 15031273 SNP-3.15029919. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 40 3 15032589 SNP-3.15031235. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 41 3 15032652 SNP-3.15031298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 | |
| 42 3 15033259 SNP-3.15031905. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 43 3 15041164 SNP-3.15039810. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 | |
| 44 3 15045891 SNP-3.15044537. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 45 3 15048277 SNP-3.15046923. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val482Asp/c.1445C>A|1310|LOC_Os03g26329|protein_coding|CODING|LOC_Os03g26329.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 | |
| 46 3 15048568 SNP-3.15047214. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cGc|p.Pro579Arg/c.1736A>G|1310|LOC_Os03g26329|protein_coding|CODING|LOC_Os03g26329.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 47 3 15063744 SNP-3.15062390. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 48 3 15063983 SNP-3.15062629. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 49 3 15064067 SNP-3.15062713. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 50 3 15064405 SNP-3.15063051. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly37Gly/c.109A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 51 3 15065635 SNP-3.15064281. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgg/Ggg|p.Trp166Gly/c.496A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 52 3 15065828 SNP-3.15064474. A G . . PR;EFF=intron_variant(MODIFIER|||c.515+174A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 53 3 15067575 SNP-3.15066221. A G . . PR;EFF=intron_variant(MODIFIER|||c.516-13A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 54 3 15067632 SNP-3.15066278. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tGa|p.Ser187*/c.560A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 55 3 15067704 SNP-3.15066350. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro211Arg/c.632A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 | |
| 56 3 15067776 SNP-3.15066422. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val235Gly/c.704A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 | |
| 57 3 15067863 SNP-3.15066509. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His264His/c.791C>A|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 58 3 15067938 SNP-3.15066584. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro289Arg/c.866A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 59 3 15067978 SNP-3.15066624. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agT/agG|p.Ser302Arg/c.906A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. | |
| 60 3 15068177 SNP-3.15066823. A G . . PR;EFF=synonymous_variant(LOW||Gca/Gca|p.Ala369Ala/c.1105A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 61 3 15068200 SNP-3.15066846. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taG|p.Tyr376*/c.1128A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 62 3 15068596 SNP-3.15067242. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys452Trp/c.1356A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 63 3 15069419 SNP-3.15068065. A G . . PR;EFF=synonymous_variant(LOW||Gga/Gga|p.Gly696Gly/c.2086A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 64 3 15069431 SNP-3.15068077. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Gct|p.Pro700Ala/c.2098A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 | |
| 65 3 15069683 SNP-3.15068329. A G . . PR;EFF=splice_donor_variant(HIGH|||c.2267A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1),intron_variant(MODIFIER|||c.2266+1A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1);LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 66 3 15069856 SNP-3.15068502. A G . . PR;EFF=intron_variant(MODIFIER|||c.2266+174A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 67 3 15069889 SNP-3.15068535. A G . . PR;EFF=intron_variant(MODIFIER|||c.2266+207A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 | |
| 68 3 15070071 SNP-3.15068717. A G . . PR;EFF=intron_variant(MODIFIER|||c.2267-189A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 69 3 15070205 SNP-3.15068851. A G . . PR;EFF=intron_variant(MODIFIER|||c.2267-55A>G|840|LOC_Os03g26350|protein_coding|CODING|LOC_Os03g26350.1|8|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 70 3 15070559 SNP-3.15069205. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 | |
| 71 3 15070657 SNP-3.15069303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 | |
| 72 3 15071721 SNP-3.15070367. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Gtg|p.Leu124Val/c.370A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 | |
| 73 3 15071916 SNP-3.15070562. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr163Arg/c.488A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 74 3 15072360 SNP-3.15071006. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+115A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 75 3 15072470 SNP-3.15071116. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+225A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. | |
| 76 3 15072855 SNP-3.15071501. A G . . PR;EFF=intron_variant(MODIFIER|||c.817+610A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 77 3 15073143 SNP-3.15071789. A G . . PR;EFF=intron_variant(MODIFIER|||c.818-652A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 78 3 15073653 SNP-3.15072299. A G . . PR;EFF=intron_variant(MODIFIER|||c.818-142A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 | |
| 79 3 15073924 SNP-3.15072570. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tGa|p.Ser316*/c.947A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26360|LOC_Os03g26360|1|1.00);NMD=(LOC_Os03g26360|LOC_Os03g26360|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 80 3 15074046 SNP-3.15072692. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgt/Ggt|p.Arg340Gly/c.1018A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 | |
| 81 3 15075268 SNP-3.15073914. A G . . PR;EFF=synonymous_variant(LOW||Gaa/Gaa|p.Glu510Glu/c.1528A>G|515|LOC_Os03g26360|protein_coding|CODING|LOC_Os03g26360.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 82 3 15076823 SNP-3.15075469. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 | |
| 83 3 15092922 SNP-3.15091568. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 84 3 15093289 SNP-3.15091935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 85 3 15094063 SNP-3.15092709. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 86 3 15095753 SNP-3.15094399. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 | |
| 87 3 15097742 SNP-3.15096388. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg209Arg/c.626A>G|220|LOC_Os03g26420|protein_coding|CODING|LOC_Os03g26420.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 | |
| 88 3 15098539 SNP-3.15097185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 | |
| 89 3 15104295 SNP-3.15102941. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 90 3 15105593 SNP-3.15104239. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 91 3 15105921 SNP-3.15104567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 | |
| 92 3 15106183 SNP-3.15104829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 | |
| 93 3 15108121 SNP-3.15106767. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg92Arg/c.275A>G|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 | |
| 94 3 15108954 SNP-3.15107600. A G . . PR;EFF=intron_variant(MODIFIER|||c.468+106A>G|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 95 3 15112916 SNP-3.15111562. C A . . PR;EFF=intron_variant(MODIFIER|||c.1157-616C>A|411|LOC_Os03g26440|protein_coding|CODING|LOC_Os03g26440.1|14|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 96 3 15116227 SNP-3.15114873. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser85Ser/c.255C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|3|1) GT 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 97 3 15117473 SNP-3.15116119. A G . . PR;EFF=intron_variant(MODIFIER|||c.580-207A>G|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 98 3 15118197 SNP-3.15116843ga. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||219|c.*219C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 | |
| 99 3 15118218 SNP-3.15116864. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||240|c.*240C>A|252|LOC_Os03g26450|protein_coding|CODING|LOC_Os03g26450.1|8|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 100 3 15120220 SNP-3.15118866. A G . . PR;EFF=intron_variant(MODIFIER|||c.614-34T>C|260|LOC_Os03g26460|protein_coding|CODING|LOC_Os03g26460.1|3|1),intron_variant(MODIFIER|||c.614-34T>C|247|LOC_Os03g26460|protein_coding|CODING|LOC_Os03g26460.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 101 3 15122456 SNP-3.15121102. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 102 3 15123271 SNP-3.15121917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 103 3 15123515 SNP-3.15122161. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 104 3 15124843 SNP-3.15123489. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acG|p.Thr141Thr/c.423A>G|429|LOC_Os03g26480|protein_coding|CODING|LOC_Os03g26480.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 | |
| 105 3 15126492 SNP-3.15125138. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Gca|p.Pro242Ala/c.724A>G|429|LOC_Os03g26480|protein_coding|CODING|LOC_Os03g26480.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 | |
| 106 3 15131782 SNP-3.15130428. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAc/gTc|p.Asp119Val/c.356G>T|249|LOC_Os03g26500|protein_coding|CODING|LOC_Os03g26500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 107 3 15134720 SNP-3.15133366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 108 3 15134837 SNP-3.15133483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 109 3 15135234 SNP-3.15133880. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 110 3 15135562 SNP-3.15134208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 111 3 15135826 SNP-3.15134472. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 112 3 15137113 SNP-3.15135759. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 113 3 15138175 SNP-3.15136821. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 | |
| 114 3 15140186 SNP-3.15138832. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 115 3 15141993 SNP-3.15140639. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 116 3 15142981 SNP-3.15141627. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 117 3 15145671 SNP-3.15144317. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 118 3 15146229 SNP-3.15144875. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 119 3 15146763 SNP-3.15145409. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.491G>T|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|2|1),intron_variant(MODIFIER|||c.491-2G>T|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|1|1);LOF=(LOC_Os03g26520|LOC_Os03g26520|1|1.00) GT 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 120 3 15146784 SNP-3.15145430. A G . . PR;EFF=intron_variant(MODIFIER|||c.491-23T>C|201|LOC_Os03g26520|protein_coding|CODING|LOC_Os03g26520.1|1|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 121 3 15147681 SNP-3.15146327. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 122 3 15151367 SNP-3.15150013. C A . . PR;EFF=synonymous_variant(LOW||tAt/tAt|p.Tyr454Tyr/c.1361C>A|467|LOC_Os03g26530|protein_coding|CODING|LOC_Os03g26530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 123 3 15151714 SNP-3.15150360. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||304|c.*304A>G|467|LOC_Os03g26530|protein_coding|CODING|LOC_Os03g26530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. | |
| 124 3 15154622 SNP-3.15153268. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 125 3 15155173 SNP-3.15153819. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 126 3 15155827 SNP-3.15154473. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 127 3 15155951 SNP-3.15154597. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 128 3 15158042 SNP-3.15156688. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 129 3 15163259 SNP-3.15161905. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 130 3 15163904 SNP-3.15162550. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 131 3 15164146 SNP-3.15162792. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 132 3 15164772 SNP-3.15163418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 133 3 15165486 SNP-3.15164132. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTg/gGg|p.Val9Gly/c.26A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 134 3 15165606 SNP-3.15164252. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met49Arg/c.146A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 135 3 15165621 SNP-3.15164267. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp54Gly/c.161A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 136 3 15165706 SNP-3.15164352. A G . . PR;EFF=intron_variant(MODIFIER|||c.170-19A>G|75|LOC_Os03g26550|protein_coding|CODING|LOC_Os03g26550.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 | |
| 137 3 15177294 SNP-3.15175940. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 | |
| 138 3 15177335 SNP-3.15175981. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 139 3 15178305 SNP-3.15176951. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 140 3 15178849 SNP-3.15177495. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 141 3 15178882 SNP-3.15177528. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cAt|p.Leu4His/c.11C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 142 3 15180161 SNP-3.15178807. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe279Ile/c.835C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 143 3 15180305 SNP-3.15178951. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln327Glu/c.979A>G|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 144 3 15180782 SNP-3.15179428. C A . . PR;EFF=synonymous_variant(LOW||Agc/Agc|p.Ser486Ser/c.1456C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 145 3 15181560 SNP-3.15180206. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aGt|p.Thr691Ser/c.2072A>G|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 146 3 15181674 SNP-3.15180320. C A . . PR;EFF=synonymous_variant(LOW||gAc/gAc|p.Asp729Asp/c.2186C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 | |
| 147 3 15182020 SNP-3.15180666. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn809Lys/c.2427C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.2427C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. | |
| 148 3 15182293 SNP-3.15180939. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taA|p.Tyr900*/c.2700C>A|1094|LOC_Os03g26570|protein_coding|CODING|LOC_Os03g26570.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g26570|LOC_Os03g26570|1|1.00);NMD=(LOC_Os03g26570|LOC_Os03g26570|1|1.00) GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 149 3 15183245 SNP-3.15181891. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 150 3 15183327 SNP-3.15181973. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 | |
| 151 3 15183542 SNP-3.15182188. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. ./. ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 152 3 15185690 SNP-3.15184336. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 153 3 15185780 SNP-3.15184426. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 | |
| 154 3 15186485 SNP-3.15185131. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 155 3 15186576 SNP-3.15185222. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 156 3 15187562 SNP-3.15186208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. | |
| 157 3 15187944 SNP-3.15186590. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 158 3 15188301 SNP-3.15186947. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 1/1 | |
| 159 3 15189650 SNP-3.15188296. A G . . PR;EFF=intron_variant(MODIFIER|||c.-164-104A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|1|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 | |
| 160 3 15189903 SNP-3.15188549. A G . . PR;EFF=intron_variant(MODIFIER|||c.-94+79A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 161 3 15190247 SNP-3.15188893. C A . . PR;EFF=intron_variant(MODIFIER|||c.-94+423C>A|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 162 3 15194289 SNP-3.15192935. A G . . PR;EFF=intron_variant(MODIFIER|||c.-93-62A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 163 3 15194367 SNP-3.15193013. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||77|c.-77A>G|174|LOC_Os03g26590|protein_coding|CODING|LOC_Os03g26590.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 164 3 15199663 SNP-3.15198309. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 165 3 15199752 SNP-3.15198398. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 166 3 15199829 SNP-3.15198475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 167 3 15201959 SNP-3.15200605. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 168 3 15202420 SNP-3.15201066. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 | |
| 169 3 15206365 SNP-3.15205011. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aGg|p.Lys329Arg/c.986A>G|497|LOC_Os03g26610|protein_coding|CODING|LOC_Os03g26610.1|5|1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 | |
| 170 3 15208339 SNP-3.15206985. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 | |
| 171 3 15208375 SNP-3.15207021. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 172 3 15208508 SNP-3.15207154. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 | |
| 173 3 15210667 SNP-3.15209313. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||356|c.*356C>A|472|LOC_Os03g26620|protein_coding|CODING|LOC_Os03g26620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 174 3 15210787 SNP-3.15209433. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 175 3 15212642 SNP-3.15211288. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. ./. ./. 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 176 3 15212918 SNP-3.15211564. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 177 3 15214904 SNP-3.15213550. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala637Pro/c.1909T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala637Pro/c.1909T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 178 3 15215501 SNP-3.15214147. A G . . PR;EFF=intron_variant(MODIFIER|||c.1683+94T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|5|1),intron_variant(MODIFIER|||c.1683+94T>C|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|5|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 179 3 15215914 SNP-3.15214560. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn485Ile/c.1454G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn485Ile/c.1454G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 180 3 15216651 SNP-3.15215297. C A . . PR;EFF=intron_variant(MODIFIER|||c.1333+184G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.1|3|1),intron_variant(MODIFIER|||c.1333+184G>T|715|LOC_Os03g26630|protein_coding|CODING|LOC_Os03g26630.2|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 181 3 15219769 SNP-3.15218415. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 182 3 15222669 SNP-3.15221315. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 183 3 15222691 SNP-3.15221337. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 184 3 15223329 SNP-3.15221975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 185 3 15224013 SNP-3.15222659. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 186 3 15224158 SNP-3.15222804. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||505|c.-505A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 187 3 15224552 SNP-3.15223198. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||111|c.-111C>A|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-54-57C>A|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 188 3 15224739 SNP-3.15223385. A G . . PR;EFF=synonymous_variant(LOW||aGg/aGg|p.Arg26Arg/c.77A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aGg/aGg|p.Arg26Arg/c.77A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 189 3 15225273 SNP-3.15223919. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctc/Gtc|p.Leu156Val/c.466A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ctc/Gtc|p.Leu156Val/c.466A>G|157|LOC_Os03g26650|protein_coding|CODING|LOC_Os03g26650.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 | |
| 190 3 15225820 SNP-3.15224466. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 | |
| 191 3 15226647 SNP-3.15225293. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. | |
| 192 3 15233433 SNP-3.15232079. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 | |
| 193 3 15233559 SNP-3.15232205. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 | |
| 194 3 15234063 SNP-3.15232709. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 195 3 15235833 SNP-3.15234479. A G . . PR;EFF=synonymous_variant(LOW||Ctt/Ctt|p.Leu80Leu/c.238T>C|158|LOC_Os03g26680|protein_coding|CODING|LOC_Os03g26680.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 196 3 15239794 SNP-3.15238440. A G . . PR;EFF=intron_variant(MODIFIER|||c.957-297A>G|817|LOC_Os03g26690|protein_coding|CODING|LOC_Os03g26690.1|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 197 3 15241687 SNP-3.15240333. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys536Lys/c.1608C>A|817|LOC_Os03g26690|protein_coding|CODING|LOC_Os03g26690.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 198 3 15254129 SNP-3.15252775. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 199 3 15254265 SNP-3.15252911. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 200 3 15290587 SNP-3.15289233. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 | |
| 201 3 15290918 SNP-3.15289564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 202 3 15291376 SNP-3.15290022. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaC|p.Lys417Asn/c.1251T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 203 3 15292524 SNP-3.15291170. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp118Ala/c.353T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 | |
| 204 3 15292560 SNP-3.15291206. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg106Pro/c.317T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 | |
| 205 3 15292626 SNP-3.15291272. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAa/cCa|p.Gln84Pro/c.251T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 206 3 15293334 SNP-3.15291980. A G . . PR;EFF=intron_variant(MODIFIER|||c.143-600T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|1|1) GT 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 | |
| 207 3 15293985 SNP-3.15292631. A G . . PR;EFF=intron_variant(MODIFIER|||c.142+129T>C|421|LOC_Os03g26784|protein_coding|CODING|LOC_Os03g26784.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 | |
| 208 3 15294598 SNP-3.15293244. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 209 3 15294874 SNP-3.15293520. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 | |
| 210 3 15301525 SNP-3.15300171. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 211 3 15304027 SNP-3.15302673. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys68Glu/c.202A>G|235|LOC_Os03g26810|protein_coding|CODING|LOC_Os03g26810.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. | |
| 212 3 15309510 SNP-3.15308156. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttt/Gtt|p.Phe176Val/c.526A>G|178|LOC_Os03g26820|protein_coding|CODING|LOC_Os03g26820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 | |
| 213 3 15309552 SNP-3.15308198. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||31|c.*31A>G|178|LOC_Os03g26820|protein_coding|CODING|LOC_Os03g26820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 | |
| 214 3 15315887 SNP-3.15314533. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 215 3 15316277 SNP-3.15314923. C A . . PR;EFF=synonymous_variant(LOW||tTg/tTg|p.Leu86Leu/c.257G>T|187|LOC_Os03g26840|protein_coding|CODING|LOC_Os03g26840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 216 3 15316494 SNP-3.15315140. A G . . PR;EFF=synonymous_variant(LOW||Ctg/Ctg|p.Leu14Leu/c.40T>C|187|LOC_Os03g26840|protein_coding|CODING|LOC_Os03g26840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 217 3 15318459 SNP-3.15317105. A G . . PR;EFF=splice_acceptor_variant(HIGH|||c.151A>G|97|LOC_Os03g26850|protein_coding|CODING|LOC_Os03g26850.1|2|1),intron_variant(MODIFIER|||c.151-1A>G|97|LOC_Os03g26850|protein_coding|CODING|LOC_Os03g26850.1|1|1);LOF=(LOC_Os03g26850|LOC_Os03g26850|1|1.00) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 218 3 15319991 SNP-3.15318637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 219 3 15320714 SNP-3.15319360. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 220 3 15321314 SNP-3.15319960. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 | |
| 221 3 15321781 SNP-3.15320427. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 222 3 15323105 SNP-3.15321751. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctA/ctT|p.Leu153Leu/c.459G>T|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 223 3 15323126 SNP-3.15321772. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln146His/c.438G>T|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 224 3 15323380 SNP-3.15322026. A G . . PR;EFF=intron_variant(MODIFIER|||c.367-183T>C|332|LOC_Os03g26860|protein_coding|CODING|LOC_Os03g26860.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 225 3 15326858 SNP-3.15325504. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 226 3 15326925 SNP-3.15325571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 227 3 15327621 SNP-3.15326267. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 | |
| 228 3 15327657 SNP-3.15326303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 229 3 15327752 SNP-3.15326398. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 230 3 15328210 SNP-3.15326856. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 231 3 15329206 SNP-3.15327852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 232 3 15329912 SNP-3.15328558. A G . . PR;EFF=intron_variant(MODIFIER|||c.-116-20A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|1|1),intron_variant(MODIFIER|||c.-1641-20A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|1|1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. | |
| 233 3 15331834 SNP-3.15330480. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1077|c.-1077A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.252+197A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|4|1) GT ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. | |
| 234 3 15332489 SNP-3.15331135. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||422|c.-422C>A|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.253-452C>A|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 235 3 15333239 SNP-3.15331885. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala154Ala/c.462A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala80Ala/c.240A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 | |
| 236 3 15333774 SNP-3.15332420. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu240Leu/c.720A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||ctG/ctG|p.Leu166Leu/c.498A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 237 3 15333798 SNP-3.15332444. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser248Ser/c.744C>A|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|9|1),synonymous_variant(LOW|SILENT|tcC/tcA|p.Ser174Ser/c.522C>A|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|8|1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 238 3 15333950 SNP-3.15332596. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys265Glu/c.793A>G|402|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.1|10|1),missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys191Glu/c.571A>G|328|LOC_Os03g26870|protein_coding|CODING|LOC_Os03g26870.2|9|1) GT ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 | |
| 239 3 15335806 SNP-3.15334452. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 240 3 15335891 SNP-3.15334537. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 241 3 15336159 SNP-3.15334805. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 | |
| 242 3 15336618 SNP-3.15335264. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 243 3 15336996 SNP-3.15335642. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 | |
| 244 3 15337287 SNP-3.15335933. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 245 3 15340437 SNP-3.15339083. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 0/0 0/0 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 246 3 15341253 SNP-3.15339899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 247 3 15341900 SNP-3.15340546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 | |
| 248 3 15343206 SNP-3.15341852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 249 3 15346607 SNP-3.15345253. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 250 3 15347942 SNP-3.15346588. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 251 3 15348159 SNP-3.15346805. A G . . PR;EFF=intron_variant(MODIFIER|||c.52-40A>G|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 252 3 15349886 SNP-3.15348532. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His445Gln/c.1335C>A|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 253 3 15351072 SNP-3.15349718. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcA|p.Ser757Ser/c.2271C>A|800|LOC_Os03g26880|protein_coding|CODING|LOC_Os03g26880.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 254 3 15352213 SNP-3.15350859. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttG/ttC|p.Leu1190Phe/c.3570T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 255 3 15353046 SNP-3.15351692. C A . . PR;EFF=intron_variant(MODIFIER|||c.2885-52G>T|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|5|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 | |
| 256 3 15355248 SNP-3.15353894. A G . . PR;EFF=synonymous_variant(LOW||aCt/aCt|p.Thr508Thr/c.1523T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 257 3 15355846 SNP-3.15354492. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg340Arg/c.1018T>C|1372|LOC_Os03g26890|protein_coding|CODING|LOC_Os03g26890.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 258 3 15357818 SNP-3.15356464. C A . . PR;EFF=intron_variant(MODIFIER|||c.458-173G>T|321|LOC_Os03g26900|protein_coding|CODING|LOC_Os03g26900.1|2|1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 259 3 15358532 SNP-3.15357178. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caG/caC|p.Gln22His/c.66T>C|321|LOC_Os03g26900|protein_coding|CODING|LOC_Os03g26900.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 | |
| 260 3 15361028 SNP-3.15359674. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 | |
| 261 3 15361971 SNP-3.15360617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 262 3 15363498 SNP-3.15362144. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 263 3 15366115 SNP-3.15364761. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 264 3 15366187 SNP-3.15364833. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 265 3 15367078 SNP-3.15365724. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 266 3 15368555 SNP-3.15367201. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 267 3 15369388 SNP-3.15368034. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 268 3 15369587 SNP-3.15368233. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 269 3 15369786 SNP-3.15368432. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 270 3 15370592 SNP-3.15369238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 | |
| 271 3 15370686 SNP-3.15369332. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 272 3 15370768 SNP-3.15369414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 273 3 15371351 SNP-3.15369997. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 274 3 15372006 SNP-3.15370652. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 275 3 15373779 SNP-3.15372425. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 276 3 15377035 SNP-3.15375681. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 277 3 15378020 SNP-3.15376666. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 278 3 15379589 SNP-3.15378235. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 279 3 15379816 SNP-3.15378462. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 280 3 15379991 SNP-3.15378637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 | |
| 281 3 15382697 SNP-3.15381343. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro148Pro/c.444C>A|374|LOC_Os03g26910|protein_coding|CODING|LOC_Os03g26910.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 282 3 15384795 SNP-3.15383441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 283 3 15386720 SNP-3.15385366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 284 3 15387032 SNP-3.15385678. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 285 3 15388007 SNP-3.15386653. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 286 3 15388697 SNP-3.15387343. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 287 3 15389271 SNP-3.15387917. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 288 3 15389524 SNP-3.15388170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 289 3 15389626 SNP-3.15388272. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 290 3 15390114 SNP-3.15388760. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 291 3 15393029 SNP-3.15391675. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 292 3 15395475 SNP-3.15394121. A G . . PR;EFF=synonymous_variant(LOW||cGt/cGt|p.Arg50Arg/c.149A>G|503|LOC_Os03g26920|protein_coding|CODING|LOC_Os03g26920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 293 3 15399098 SNP-3.15397744. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 ./. 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 0/1 ./. 0/1 0/0 | |
| 294 3 15401934 SNP-3.15400580. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCc/gGc|p.Ala290Gly/c.869A>G|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 295 3 15402454 SNP-3.15401100. C A . . PR;EFF=intron_variant(MODIFIER|||c.1094+201C>A|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|5|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 296 3 15402840 SNP-3.15401486. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro376Pro/c.1128A>G|478|LOC_Os03g26930|protein_coding|CODING|LOC_Os03g26930.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 297 3 15407650 SNP-3.15406296. A G . . PR;EFF=intron_variant(MODIFIER|||c.248-77A>G|181|LOC_Os03g26940|protein_coding|CODING|LOC_Os03g26940.1|2|1) GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 298 3 15407820 SNP-3.15406466. A G . . PR;EFF=intron_variant(MODIFIER|||c.298+43A>G|181|LOC_Os03g26940|protein_coding|CODING|LOC_Os03g26940.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 299 3 15410098 SNP-3.15408744. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 | |
| 300 3 15417237 SNP-3.15415883. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp1054Gly/c.3161A>G|1581|LOC_Os03g26960|protein_coding|CODING|LOC_Os03g26960.1|13|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 | |
| 301 3 15420573 SNP-3.15419219. A G . . PR;EFF=intron_variant(MODIFIER|||c.118+84A>G|235|LOC_Os03g26970|protein_coding|CODING|LOC_Os03g26970.1|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 302 3 15423622 SNP-3.15422268. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaG|p.Asp181Glu/c.543A>G|235|LOC_Os03g26970|protein_coding|CODING|LOC_Os03g26970.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 303 3 15426783 SNP-3.15425429. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 304 3 15428351 SNP-3.15426997. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 305 3 15429024 SNP-3.15427670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 306 3 15431066 SNP-3.15429712. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 307 3 15432664 SNP-3.15431310. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 308 3 15433832 SNP-3.15432478. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 309 3 15434604 SNP-3.15433250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 310 3 15437886 SNP-3.15436532. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 | |
| 311 3 15442866 SNP-3.15441512. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 312 3 15443878 SNP-3.15442524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 313 3 15445331 SNP-3.15443977. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 | |
| 314 3 15446453 SNP-3.15445099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 315 3 15447518 SNP-3.15446164. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 | |
| 316 3 15449713 SNP-3.15448359. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 | |
| 317 3 15451422 SNP-3.15450068. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 318 3 15451733 SNP-3.15450379. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 319 3 15452883 SNP-3.15451529. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 320 3 15453230 SNP-3.15451876. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 321 3 15454100 SNP-3.15452746. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile13Asn/c.38C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile13Asn/c.38C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 322 3 15454253 SNP-3.15452899. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met64Lys/c.191C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met64Lys/c.191C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 | |
| 323 3 15455450 SNP-3.15454096. A G . . PR;EFF=intron_variant(MODIFIER|||c.*65-712A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|2|1),intron_variant(MODIFIER|||c.*65-712A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.2|1|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 | |
| 324 3 15456672 SNP-3.15455318. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||2382|c.*575C>A|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 325 3 15457547 SNP-3.15456193. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3257|c.*1450A>G|75|LOC_Os03g27003|protein_coding|CODING|LOC_Os03g27003.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 326 3 15457947 SNP-3.15456593. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 327 3 15458910 SNP-3.15457556. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 328 3 15459967 SNP-3.15458613. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 329 3 15462917 SNP-3.15461563. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||182|c.*182A>G|290|LOC_Os03g27010|protein_coding|CODING|LOC_Os03g27010.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 330 3 15463539 SNP-3.15462185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 331 3 15463651 SNP-3.15462297. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 332 3 15473418 SNP-3.15472064. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys567Lys/c.1699C>A|572|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys567Lys/c.1699C>A|572|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys566Lys/c.1696C>A|571|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.3|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aaa/Aaa|p.Lys543Lys/c.1627C>A|548|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.5|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||748|c.*653C>A|505|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.6|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1472|c.*599C>A|364|LOC_Os03g27019|protein_coding|CODING|LOC_Os03g27019.7|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 333 3 15476947 SNP-3.15475593. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr35Ser/c.103G>T|184|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.303-137G>T|206|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.1|4|1),intron_variant(MODIFIER|||c.303-137G>T|205|LOC_Os03g27030|protein_coding|CODING|LOC_Os03g27030.2|4|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 334 3 15482936 SNP-3.15481582. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 | |
| 335 3 15482992 SNP-3.15481638. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 336 3 15483577 SNP-3.15482223. A G . . PR;EFF=synonymous_variant(LOW||aGt/aGt|p.Ser56Ser/c.167A>G|130|LOC_Os03g27050|protein_coding|CODING|LOC_Os03g27050.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 337 3 15485632 SNP-3.15484278. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 338 3 15486523 SNP-3.15485169. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 339 3 15486613 SNP-3.15485259. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 340 3 15487081 SNP-3.15485727. A G . . PR;EFF=synonymous_variant(LOW||atG/atG|p.Met12Met/c.36A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 | |
| 341 3 15487224 SNP-3.15485870. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTg/gGg|p.Val60Gly/c.179A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 342 3 15487245 SNP-3.15485891. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cGt|p.His67Arg/c.200A>G|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1) GT ./. ./. 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 | |
| 343 3 15487265 SNP-3.15485911. C A . . PR;EFF=splice_donor_variant(HIGH|||c.220C>A|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1),intron_variant(MODIFIER|||c.219+1C>A|140|LOC_Os03g27054|protein_coding|CODING|LOC_Os03g27054.1|1|1);LOF=(LOC_Os03g27054|LOC_Os03g27054|1|1.00) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 344 3 15491015 SNP-3.15489661. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 | |
| 345 3 15493570 SNP-3.15492216. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aAa|p.Thr75Lys/c.224C>A|169|LOC_Os03g27070|protein_coding|CODING|LOC_Os03g27070.1|1|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 346 3 15493738 SNP-3.15492384. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala95Ala/c.285C>A|169|LOC_Os03g27070|protein_coding|CODING|LOC_Os03g27070.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 347 3 15494636 SNP-3.15493282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 348 3 15497892 SNP-3.15496538. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/1 ./. 0/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 | |
| 349 3 15505717 SNP-3.15504363. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gaA/gaG|p.Glu276Glu/c.828A>G|545|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.1|3|1),synonymous_variant(LOW|SILENT|gaA/gaG|p.Glu276Glu/c.828A>G|509|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 350 3 15507530 SNP-3.15506176. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Gct|p.Ser542Ala/c.1624A>G|545|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||563|c.*563A>G|509|LOC_Os03g27080|protein_coding|CODING|LOC_Os03g27080.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 | |
| 351 3 15508267 SNP-3.15506913. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 352 3 15511291 SNP-3.15509937. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 353 3 15512315 SNP-3.15510961. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 354 3 15514427 SNP-3.15513073. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 355 3 15516480 SNP-3.15515126. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 356 3 15519829 SNP-3.15518475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 357 3 15523120 SNP-3.15521766. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 | |
| 358 3 15523284 SNP-3.15521930. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 | |
| 359 3 15524641 SNP-3.15523287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 | |
| 360 3 15529204 SNP-3.15527850. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu256Leu/c.768A>G|338|LOC_Os03g27110|protein_coding|CODING|LOC_Os03g27110.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 361 3 15529402 SNP-3.15528048. C A . . PR;EFF=intron_variant(MODIFIER|||c.860+18C>A|338|LOC_Os03g27110|protein_coding|CODING|LOC_Os03g27110.1|3|1) GT 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 362 3 15530319 SNP-3.15528965. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 363 3 15530704 SNP-3.15529350. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||258|c.*258T>C|368|LOC_Os03g27120|protein_coding|CODING|LOC_Os03g27120.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. | |
| 364 3 15533512 SNP-3.15532158. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 365 3 15534597 SNP-3.15533243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 | |
| 366 3 15534832 SNP-3.15533478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 | |
| 367 3 15535412 SNP-3.15534058. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. | |
| 368 3 15550180 SNP-3.15548826. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 369 3 15550690 SNP-3.15549336. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 | |
| 370 3 15550878 SNP-3.15549524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 371 3 15551274 SNP-3.15549920. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 372 3 15553792 SNP-3.15552438. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 373 3 15554798 SNP-3.15553444. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 | |
| 374 3 15558056 SNP-3.15556702. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 | |
| 375 3 15558608 SNP-3.15557254. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 | |
| 376 3 15560579 SNP-3.15559225. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro31Arg/c.92A>G|91|LOC_Os03g27160|protein_coding|CODING|LOC_Os03g27160.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 | |
| 377 3 15562827 SNP-3.15561473. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 | |
| 378 3 15566406 SNP-3.15565052. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 | |
| 379 3 15567183 SNP-3.15565829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 | |
| 380 3 15568341 SNP-3.15566987. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aag/Tag|p.Lys291*/c.871G>T|302|LOC_Os03g27190|protein_coding|CODING|LOC_Os03g27190.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 | |
| 381 3 15574292 SNP-3.15572938. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 382 3 15575719 SNP-3.15574365. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 383 3 15576415 SNP-3.15575061. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 384 3 15576739 SNP-3.15575385. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 385 3 15577351 SNP-3.15575997. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 386 3 15577952 SNP-3.15576598. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 387 3 15578355 SNP-3.15577001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 | |
| 388 3 15578684 SNP-3.15577330. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 389 3 15579534 SNP-3.15578180. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 | |
| 390 3 15586161 SNP-3.15584807. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acC|p.Thr228Thr/c.684T>C|369|LOC_Os03g27210|protein_coding|CODING|LOC_Os03g27210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 391 3 15587687 SNP-3.15586333. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 392 3 15588394 SNP-3.15587040. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 393 3 15589168 SNP-3.15587814. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. | |
| 394 3 15591769 SNP-3.15590415. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 | |
| 395 3 15592964 SNP-3.15591610. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 | |
| 396 3 15593033 SNP-3.15591679. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 | |
| 397 3 15593083 SNP-3.15591729. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 398 3 15593983 SNP-3.15592629. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 399 3 15596333 SNP-3.15594979. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 400 3 15597089 SNP-3.15595735. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 401 3 15599575 SNP-3.15598221. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 | |
| 402 3 15600047 SNP-3.15598693. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 403 3 15600414 SNP-3.15599060. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 404 3 15601856 SNP-3.15600502. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 405 3 15602755 SNP-3.15601401. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 406 3 15604306 SNP-3.15602952. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aGg|p.Lys122Arg/c.365A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 | |
| 407 3 15605931 SNP-3.15604577. A G . . PR;EFF=intron_variant(MODIFIER|||c.864-143A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|2|1) GT 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 | |
| 408 3 15606188 SNP-3.15604834. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys326Trp/c.978A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 | |
| 409 3 15606329 SNP-3.15604975. A G . . PR;EFF=synonymous_variant(LOW||gtG/gtG|p.Val373Val/c.1119A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 410 3 15607445 SNP-3.15606091. A G . . PR;EFF=intron_variant(MODIFIER|||c.1387-690A>G|555|LOC_Os03g27230|protein_coding|CODING|LOC_Os03g27230.1|4|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 411 3 15610080 SNP-3.15608726. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 412 3 15610619 SNP-3.15609265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 413 3 15613875 SNP-3.15612521. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 414 3 15615734 SNP-3.15614380. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His124Gln/c.372C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 415 3 15617233 SNP-3.15615879. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp372Glu/c.1116C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 416 3 15618492 SNP-3.15617138. C A . . PR;EFF=synonymous_variant(LOW||cAa/cAa|p.Gln581Gln/c.1742C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 417 3 15618508 SNP-3.15617154. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro586Pro/c.1758C>A|953|LOC_Os03g27250|protein_coding|CODING|LOC_Os03g27250.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 418 3 15625137 SNP-3.15623783. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 419 3 15625252 SNP-3.15623898. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 420 3 15626613 SNP-3.15625259. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu24Glu/c.72C>A|220|LOC_Os03g27270|protein_coding|CODING|LOC_Os03g27270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 421 3 15627582 SNP-3.15626228. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 422 3 15630323 SNP-3.15628969. C A . . PR;EFF=intron_variant(MODIFIER|||c.196-350G>T|342|LOC_Os03g27280|protein_coding|CODING|LOC_Os03g27280.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 423 3 15630482 SNP-3.15629128. C A . . PR;EFF=intron_variant(MODIFIER|||c.196-509G>T|342|LOC_Os03g27280|protein_coding|CODING|LOC_Os03g27280.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 424 3 15632541 SNP-3.15631187. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 425 3 15633595 SNP-3.15632241. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 426 3 15634843 SNP-3.15633489. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 | |
| 427 3 15635264 SNP-3.15633910. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 428 3 15638394 SNP-3.15637040. A G . . PR;EFF=intron_variant(MODIFIER|||c.36+397A>G|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 ./. | |
| 429 3 15638443 SNP-3.15637089. C A . . PR;EFF=intron_variant(MODIFIER|||c.36+446C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|1|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 430 3 15640372 SNP-3.15639018. C A . . PR;EFF=splice_region_variant(LOW|||c.39C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gaA/gaA|p.Glu13Glu/c.39C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 431 3 15641375 SNP-3.15640021. C A . . PR;EFF=intron_variant(MODIFIER|||c.456+395C>A|169|LOC_Os03g27290|protein_coding|CODING|LOC_Os03g27290.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 432 3 15642911 SNP-3.15641557. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 433 3 15644246 SNP-3.15642892. C A . . PR;EFF=synonymous_variant(LOW||caT/caT|p.His56His/c.168G>T|65|LOC_Os03g27300|protein_coding|CODING|LOC_Os03g27300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 434 3 15645382 SNP-3.15644028. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 435 3 15648914 SNP-3.15647560. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||59|c.-59C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||59|c.-59C>A|230|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.4|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1178|c.-507C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 436 3 15650573 SNP-3.15649219. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr58Thr/c.174C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr168Thr/c.504C>A|230|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.4|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 437 3 15651375 SNP-3.15650021. C A . . PR;EFF=intron_variant(MODIFIER|||c.542-47C>A|334|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.1|5|1),intron_variant(MODIFIER|||c.212-47C>A|224|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.5|4|1),intron_variant(MODIFIER|||c.542-107C>A|314|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.2|5|1),intron_variant(MODIFIER|||c.542-122C>A|309|LOC_Os03g27320|protein_coding|CODING|LOC_Os03g27320.3|5|1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 438 3 15661274 SNP-3.15659920. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||265|c.-265T>C|87|LOC_Os03g27340|protein_coding|CODING|LOC_Os03g27340.1|1|1),5_prime_UTR_variant(MODIFIER||265|c.-265T>C|87|LOC_Os03g27340|protein_coding|CODING|LOC_Os03g27340.2|1|1) GT ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 | |
| 439 3 15663019 SNP-3.15661665. C A . . PR;EFF=splice_region_variant(LOW|||c.517C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|3|1),splice_region_variant(LOW|||c.517C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|3|1),splice_region_variant(LOW|||c.259C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|4|1),intron_variant(MODIFIER|||c.516+4C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|3|1),intron_variant(MODIFIER|||c.516+4C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|3|1),intron_variant(MODIFIER|||c.258+4C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 440 3 15665019 SNP-3.15663665. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu392Met/c.1174C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|8|1),missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu306Met/c.916C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|9|1),missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu392Met/c.1174C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 441 3 15665154 SNP-3.15663800. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Ata|p.Val437Ile/c.1309C>A|505|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.1220-4C>A|474|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.2|8|1),intron_variant(MODIFIER|||c.962-4C>A|388|LOC_Os03g27350|protein_coding|CODING|LOC_Os03g27350.3|9|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 442 3 15667170 SNP-3.15665816. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 443 3 15669666 SNP-3.15668312. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 444 3 15670928 SNP-3.15669574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 445 3 15671045 SNP-3.15669691. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 446 3 15672470 SNP-3.15671116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 447 3 15674475 SNP-3.15673121. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+660C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|1|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 448 3 15675533 SNP-3.15674179. C A . . PR;EFF=intron_variant(MODIFIER|||c.97-89C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|1|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 449 3 15678560 SNP-3.15677206. A G . . PR;EFF=synonymous_variant(LOW||acG/acG|p.Thr829Thr/c.2487A>G|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 | |
| 450 3 15678743 SNP-3.15677389. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||114|c.*114C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 451 3 15679056 SNP-3.15677702. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||427|c.*427C>A|851|LOC_Os03g27370|protein_coding|CODING|LOC_Os03g27370.1|4|1) GT 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 452 3 15680226 SNP-3.15678872. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 453 3 15683355 SNP-3.15682001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 454 3 15684816 SNP-3.15683462. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 | |
| 455 3 15685034 SNP-3.15683680. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 456 3 15685344 SNP-3.15683990. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 457 3 15686242 SNP-3.15684888. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||116|c.*116G>T|315|LOC_Os03g27390|protein_coding|CODING|LOC_Os03g27390.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||116|c.*116G>T|315|LOC_Os03g27390|protein_coding|CODING|LOC_Os03g27390.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 458 3 15695215 SNP-3.15693861. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 459 3 15695269 SNP-3.15693915. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 460 3 15696808 SNP-3.15695454. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 461 3 15702651 SNP-3.15701297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 | |
| 462 3 15703264 SNP-3.15701910. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 ./. 0/0 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 | |
| 463 3 15704365 SNP-3.15703011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 464 3 15705364 SNP-3.15704010. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 | |
| 465 3 15707329 SNP-3.15705975. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 466 3 15710789 SNP-3.15709435. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 467 3 15711523 SNP-3.15710169. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 | |
| 468 3 15712612 SNP-3.15711258. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 469 3 15712766 SNP-3.15711412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 470 3 15714336 SNP-3.15712982. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 471 3 15716353 SNP-3.15714999. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 472 3 15717090 SNP-3.15715736. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 | |
| 473 3 15718646 SNP-3.15717292. C A . . PR;EFF=splice_region_variant(LOW|||c.1254G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|5|1),synonymous_variant(LOW|SILENT|acG/acT|p.Thr418Thr/c.1254G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|5|1) GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 474 3 15719030 SNP-3.15717676. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala314Ser/c.940G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 475 3 15720172 SNP-3.15718818. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-70T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 476 3 15720536 SNP-3.15719182. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-434T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 477 3 15720660 SNP-3.15719306. A G . . PR;EFF=intron_variant(MODIFIER|||c.39-558T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 478 3 15720901 SNP-3.15719547. C A . . PR;EFF=intron_variant(MODIFIER|||c.38+731G>T|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 479 3 15720951 SNP-3.15719597. A G . . PR;EFF=intron_variant(MODIFIER|||c.38+681T>C|483|LOC_Os03g27400|protein_coding|CODING|LOC_Os03g27400.1|1|1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 480 3 15722768 SNP-3.15721414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 481 3 15722844 SNP-3.15721490. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 482 3 15723092 SNP-3.15721738. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 483 3 15725488 SNP-3.15724134. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 484 3 15726847 SNP-3.15725493. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 485 3 15729319 SNP-3.15727965. C A . . PR;EFF=intron_variant(MODIFIER|||c.938-336G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 486 3 15729443 SNP-3.15728089. C A . . PR;EFF=intron_variant(MODIFIER|||c.938-460G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 487 3 15730077 SNP-3.15728723. C A . . PR;EFF=intron_variant(MODIFIER|||c.937+264G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 488 3 15730296 SNP-3.15728942. C A . . PR;EFF=intron_variant(MODIFIER|||c.937+45G>T|405|LOC_Os03g27420|protein_coding|CODING|LOC_Os03g27420.1|6|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 489 3 15732998 SNP-3.15731644. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 490 3 15733340 SNP-3.15731986. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 491 3 15736711 SNP-3.15735357. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 492 3 15740027 SNP-3.15738673. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 | |
| 493 3 15741078 SNP-3.15739724. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 | |
| 494 3 15742728 SNP-3.15741374. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 495 3 15743490 SNP-3.15742136. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 496 3 15744367 SNP-3.15743013. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 ./. | |
| 497 3 15745506 SNP-3.15744152. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCc/cAc|p.Pro69His/c.206C>A|150|LOC_Os03g27440|protein_coding|CODING|LOC_Os03g27440.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/0 | |
| 498 3 15748572 SNP-3.15747218. C A . . PR;EFF=intron_variant(MODIFIER|||c.-96-80C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|1|1),intron_variant(MODIFIER|||c.93+254C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|2|1) GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 499 3 15750549 SNP-3.15749195. C A . . PR;EFF=intron_variant(MODIFIER|||c.406-437C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|5|1),intron_variant(MODIFIER|||c.322-437C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|5|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 500 3 15751111 SNP-3.15749757. C A . . PR;EFF=intron_variant(MODIFIER|||c.509+22C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|6|1),intron_variant(MODIFIER|||c.425+22C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|6|1) GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 501 3 15751427 SNP-3.15750073. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe171Leu/c.513C>A|175|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe199Leu/c.597C>A|203|LOC_Os03g27450|protein_coding|CODING|LOC_Os03g27450.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||3412|c.*1612G>T|405|LOC_Os03g27460|protein_coding|CODING|LOC_Os03g27460.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 502 3 15762346 SNP-3.15760992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 503 3 15763066 SNP-3.15761712. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 504 3 15764011 SNP-3.15762657. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln414Pro/c.1241T>C|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln413Pro/c.1238T>C|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 505 3 15766609 SNP-3.15765255. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly134Gly/c.402G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly134Gly/c.402G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 506 3 15766800 SNP-3.15765446. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Ttc|p.Val104Phe/c.310G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|3|1),missense_variant(MODERATE|MISSENSE|Gtc/Ttc|p.Val104Phe/c.310G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|3|1) GT 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 507 3 15767218 SNP-3.15765864. C A . . PR;EFF=synonymous_variant(LOW||aTc/aTc|p.Ile29Ile/c.86G>T|469|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aTc/aTc|p.Ile29Ile/c.86G>T|470|LOC_Os03g27480|protein_coding|CODING|LOC_Os03g27480.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 508 3 15769262 SNP-3.15767908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 509 3 15769501 SNP-3.15768147. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 | |
| 510 3 15770793 SNP-3.15769439. A G . . PR;EFF=intron_variant(MODIFIER|||c.267+108T>C|113|LOC_Os03g27484|protein_coding|CODING|LOC_Os03g27484.1|3|1) GT ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/1 0/0 0/1 | |
| 511 3 15771714 SNP-3.15770360. C A . . PR;EFF=intron_variant(MODIFIER|||c.157+486G>T|113|LOC_Os03g27484|protein_coding|CODING|LOC_Os03g27484.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 512 3 15773322 SNP-3.15771968. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 513 3 15775573 SNP-3.15774219. C A . . PR;EFF=intron_variant(MODIFIER|||c.259-421C>A|122|LOC_Os03g27490|protein_coding|CODING|LOC_Os03g27490.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 514 3 15776058 SNP-3.15774704. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aAc|p.Thr108Asn/c.323C>A|122|LOC_Os03g27490|protein_coding|CODING|LOC_Os03g27490.1|2|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 515 3 15777218 SNP-3.15775864. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 516 3 15779971 SNP-3.15778617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 517 3 15780788 SNP-3.15779434. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly280Gly/c.840G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 | |
| 518 3 15782589 SNP-3.15781235. C A . . PR;EFF=intron_variant(MODIFIER|||c.375+105G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|4|1) GT ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 519 3 15782853 SNP-3.15781499. C A . . PR;EFF=intron_variant(MODIFIER|||c.307-91G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|3|1) GT 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 520 3 15784197 SNP-3.15782843. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaT|p.Lys50Asn/c.150G>T|337|LOC_Os03g27510|protein_coding|CODING|LOC_Os03g27510.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 521 3 15792724 SNP-3.15791370. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg142Trp/c.424G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 522 3 15794165 SNP-3.15792811. C A . . PR;EFF=intron_variant(MODIFIER|||c.413-1430G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 523 3 15794967 SNP-3.15793613. C A . . PR;EFF=intron_variant(MODIFIER|||c.412+675G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 524 3 15795700 SNP-3.15794346. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|atG/atT|p.Met118Ile/c.354G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1) GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 525 3 15795737 SNP-3.15794383. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His106Leu/c.317G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 526 3 15795753 SNP-3.15794399. C A . . PR;EFF=synonymous_variant(LOW||Tgt/Tgt|p.Cys101Cys/c.301G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 527 3 15796375 SNP-3.15795021. C A . . PR;EFF=intron_variant(MODIFIER|||c.128+156G>T|390|LOC_Os03g27530|protein_coding|CODING|LOC_Os03g27530.1|1|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 528 3 15802277 SNP-3.15800923. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 | |
| 529 3 15803454 SNP-3.15802100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 530 3 15803470 SNP-3.15802116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 531 3 15804561 SNP-3.15803207. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 532 3 15804879 SNP-3.15803525. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 533 3 15808214 SNP-3.15806860. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 534 3 15808331 SNP-3.15806977. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 535 3 15808814 SNP-3.15807460. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 536 3 15809084 SNP-3.15807730. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 537 3 15809261 SNP-3.15807907. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 538 3 15809606 SNP-3.15808252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 539 3 15809832 SNP-3.15808478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 540 3 15810017 SNP-3.15808663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 541 3 15812305 SNP-3.15810951. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn30Lys/c.90C>A|128|LOC_Os03g27580|protein_coding|CODING|LOC_Os03g27580.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 542 3 15813860 SNP-3.15812506. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 543 3 15814019 SNP-3.15812665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 544 3 15814535 SNP-3.15813181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 | |
| 545 3 15814961 SNP-3.15813607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 546 3 15815100 SNP-3.15813746. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 547 3 15815426 SNP-3.15814072. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 548 3 15816152 SNP-3.15814798. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 549 3 15819390 SNP-3.15818036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 550 3 15820972 SNP-3.15819618. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 551 3 15824185 SNP-3.15822831. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||27|c.*27G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1505|c.*960G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1964|c.*969G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 552 3 15824804 SNP-3.15823450. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acT|p.Thr427Thr/c.1281G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||1345|c.*350G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||886|c.*801G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 | |
| 553 3 15826299 SNP-3.15824945. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn305Asn/c.915G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn343Asn/c.1029G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn343Asn/c.1029G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 554 3 15826347 SNP-3.15824993. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu289Asp/c.867G>T|354|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.3|6|1),missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu327Asp/c.981G>T|470|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.1|7|1),missense_variant(MODERATE|MISSENSE|gaG/gaT|p.Glu327Asp/c.981G>T|421|LOC_Os03g27590|protein_coding|CODING|LOC_Os03g27590.2|7|1) GT 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 555 3 15830365 SNP-3.15829011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 556 3 15833405 SNP-3.15832051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 557 3 15833795 SNP-3.15832441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 558 3 15835616 SNP-3.15834262. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 559 3 15836215 SNP-3.15834861. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. | |
| 560 3 15836610 SNP-3.15835256. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 561 3 15839721 SNP-3.15838367. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 562 3 15841147 SNP-3.15839793. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 563 3 15842052 SNP-3.15840698. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggT|p.Gly101Gly/c.303G>T|151|LOC_Os03g27630|protein_coding|CODING|LOC_Os03g27630.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 | |
| 564 3 15842242 SNP-3.15840888. C A . . PR;EFF=intron_variant(MODIFIER|||c.288+101G>T|151|LOC_Os03g27630|protein_coding|CODING|LOC_Os03g27630.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 565 3 15847180 SNP-3.15845826. C A . . PR;EFF=synonymous_variant(LOW||Atc/Atc|p.Ile131Ile/c.391C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 566 3 15847403 SNP-3.15846049. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cAt|p.Pro205His/c.614C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 567 3 15847427 SNP-3.15846073. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile213Asn/c.638C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 568 3 15847481 SNP-3.15846127. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr231Tyr/c.692C>A|253|LOC_Os03g27640|protein_coding|CODING|LOC_Os03g27640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 569 3 15848368 SNP-3.15847014. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 570 3 15848764 SNP-3.15847410. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 | |
| 571 3 15848878 SNP-3.15847524. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 572 3 15853768 SNP-3.15852414. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 | |
| 573 3 15857444 SNP-3.15856090. C A . . PR;EFF=intron_variant(MODIFIER|||c.427-46G>T|569|LOC_Os03g27670|protein_coding|CODING|LOC_Os03g27670.1|1|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 574 3 15860365 SNP-3.15859011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 575 3 15860636 SNP-3.15859282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 576 3 15862776 SNP-3.15861422. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 577 3 15865627 SNP-3.15864273. C A . . PR;EFF=intron_variant(MODIFIER|||c.41-1006G>T|190|LOC_Os03g27680|protein_coding|CODING|LOC_Os03g27680.1|1|1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 578 3 15865779 SNP-3.15864425. C A . . PR;EFF=intron_variant(MODIFIER|||c.41-1158G>T|190|LOC_Os03g27680|protein_coding|CODING|LOC_Os03g27680.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 579 3 15867554 SNP-3.15866200. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 | |
| 580 3 15869927 SNP-3.15868573. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 581 3 15869964 SNP-3.15868610. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 582 3 15871283 SNP-3.15869929. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 583 3 15871582 SNP-3.15870228. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 584 3 15872706 SNP-3.15871352. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 585 3 15873707 SNP-3.15872353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile12Lys/c.35C>A|102|LOC_Os03g27690|protein_coding|CODING|LOC_Os03g27690.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 586 3 15874648 SNP-3.15873294. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 | |
| 587 3 15877499 SNP-3.15876145. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 588 3 15877965 SNP-3.15876611. C A . . PR;EFF=intron_variant(MODIFIER|||c.471-19G>T|214|LOC_Os03g27700|protein_coding|CODING|LOC_Os03g27700.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 589 3 15881921 SNP-3.15880567. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 590 3 15883684 SNP-3.15882330. A G . . PR;EFF=intron_variant(MODIFIER|||c.52+109A>G|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|1|1) GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 | |
| 591 3 15884489 SNP-3.15883135. C A . . PR;EFF=intron_variant(MODIFIER|||c.52+914C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|1|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 592 3 15886037 SNP-3.15884683. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtA|p.Val193Val/c.579C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 593 3 15886252 SNP-3.15884898. C A . . PR;EFF=intron_variant(MODIFIER|||c.588+206C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 594 3 15886445 SNP-3.15885091. C A . . PR;EFF=intron_variant(MODIFIER|||c.589-254C>A|425|LOC_Os03g27710|protein_coding|CODING|LOC_Os03g27710.1|2|1) GT 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 595 3 15897972 SNP-3.15896618. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 596 3 15898240 SNP-3.15896886. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 597 3 15900299 SNP-3.15898945. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 598 3 15902939 SNP-3.15901585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 | |
| 599 3 15903204 SNP-3.15901850. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 | |
| 600 3 15903642 SNP-3.15902288. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 601 3 15904461 SNP-3.15903107. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 | |
| 602 3 15907342 SNP-3.15905988. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 603 3 15910577 SNP-3.15909223. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala49Ser/c.145G>T|308|LOC_Os03g27760|protein_coding|CODING|LOC_Os03g27760.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 604 3 15912349 SNP-3.15910995. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 605 3 15912431 SNP-3.15911077. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 606 3 15915064 SNP-3.15913710. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 607 3 15915708 SNP-3.15914354. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 | |
| 608 3 15916013 SNP-3.15914659. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 609 3 15917390 SNP-3.15916036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 610 3 15917486 SNP-3.15916132. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 611 3 15917567 SNP-3.15916213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 | |
| 612 3 15917764 SNP-3.15916410. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 613 3 15919165 SNP-3.15917811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 | |
| 614 3 15919943 SNP-3.15918589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 615 3 15921499 SNP-3.15920145. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 616 3 15922395 SNP-3.15921041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 | |
| 617 3 15922480 SNP-3.15921126. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 | |
| 618 3 15923846 SNP-3.15922492. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 619 3 15923992 SNP-3.15922638. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||621|c.*621T>C|330|LOC_Os03g27770|protein_coding|CODING|LOC_Os03g27770.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 620 3 15927697 SNP-3.15926343. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 621 3 15929137 SNP-3.15927783. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 | |
| 622 3 15929691 SNP-3.15928337. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 | |
| 623 3 15930366 SNP-3.15929012. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 624 3 15931727 SNP-3.15930373. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 625 3 15931993 SNP-3.15930639. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. | |
| 626 3 15934316 SNP-3.15932962. C A . . PR;EFF=intron_variant(MODIFIER|||c.413-22C>A|444|LOC_Os03g27780|protein_coding|CODING|LOC_Os03g27780.1|2|1),intron_variant(MODIFIER|||c.413-22C>A|439|LOC_Os03g27780|protein_coding|CODING|LOC_Os03g27780.2|2|1) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 627 3 15937104 SNP-3.15935750. C A . . PR;EFF=splice_region_variant(LOW|||c.439G>T|155|LOC_Os03g27790|protein_coding|CODING|LOC_Os03g27790.1|2|1),intron_variant(MODIFIER|||c.438+5G>T|155|LOC_Os03g27790|protein_coding|CODING|LOC_Os03g27790.1|2|1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 628 3 15940139 SNP-3.15938785. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro544Ser/c.1630G>T|776|LOC_Os03g27800|protein_coding|CODING|LOC_Os03g27800.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 629 3 15941372 SNP-3.15940018. A G . . PR;EFF=intron_variant(MODIFIER|||c.522+100T>C|776|LOC_Os03g27800|protein_coding|CODING|LOC_Os03g27800.1|2|1) GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 630 3 15943543 SNP-3.15942189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 631 3 15943766 SNP-3.15942412. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 632 3 15944709 SNP-3.15943355. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 633 3 15945019 SNP-3.15943665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 634 3 15945110 SNP-3.15943756. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 635 3 15946086 SNP-3.15944732. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 636 3 15947339 SNP-3.15945985. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 637 3 15947702 SNP-3.15946348. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 638 3 15947731 SNP-3.15946377. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 639 3 15948026 SNP-3.15946672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 | |
| 640 3 15950880 SNP-3.15949526. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tTa/tAa|p.Leu190*/c.569C>A|193|LOC_Os03g27810|protein_coding|CODING|LOC_Os03g27810.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 641 3 15953451 SNP-3.15952097. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 642 3 15954887 SNP-3.15953533. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 643 3 15955221 SNP-3.15953867. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. | |
| 644 3 15956001 SNP-3.15954647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 645 3 15962868 SNP-3.15961514. A G . . PR;EFF=intron_variant(MODIFIER|||c.445-503A>G|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|3|1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 646 3 15963726 SNP-3.15962372. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Aat|p.His242Asn/c.724C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|5|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 647 3 15964296 SNP-3.15962942. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val403Asp/c.1208C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 648 3 15964532 SNP-3.15963178. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser482Thr/c.1444C>A|778|LOC_Os03g27820|protein_coding|CODING|LOC_Os03g27820.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 649 3 15966855 SNP-3.15965501. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 | |
| 650 3 15968302 SNP-3.15966948. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||685|c.*685T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 651 3 15968647 SNP-3.15967293. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||340|c.*340T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 | |
| 652 3 15968918 SNP-3.15967564. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||69|c.*69T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 653 3 15969236 SNP-3.15967882. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctC|p.Leu190Leu/c.570T>C|272|LOC_Os03g27830|protein_coding|CODING|LOC_Os03g27830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 | |
| 654 3 15970345 SNP-3.15968991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 655 3 15970854 SNP-3.15969500. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 | |
| 656 3 15971326 SNP-3.15969972. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 657 3 15972105 SNP-3.15970751. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 | |
| 658 3 15974601 SNP-3.15973247. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 659 3 15976989 SNP-3.15975635. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 660 3 15977444 SNP-3.15976090. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 661 3 15978213 SNP-3.15976859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 662 3 15979612 SNP-3.15978258. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 663 3 15979735 SNP-3.15978381. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 | |
| 664 3 15980358 SNP-3.15979004. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 | |
| 665 3 15981578 SNP-3.15980224. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 666 3 15983192 SNP-3.15981838. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 667 3 15985025 SNP-3.15983671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 | |
| 668 3 15988366 SNP-3.15987012. C A . . PR;EFF=intron_variant(MODIFIER|||c.386-66C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|3|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 669 3 15989426 SNP-3.15988072. C A . . PR;EFF=intron_variant(MODIFIER|||c.462-722C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|4|1) GT ./. 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 670 3 15990244 SNP-3.15988890. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys186Lys/c.558C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 | |
| 671 3 15991434 SNP-3.15990080. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu396Glu/c.1188C>A|531|LOC_Os03g27840|protein_coding|CODING|LOC_Os03g27840.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 672 3 15997983 SNP-3.15996629. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 673 3 15998144 SNP-3.15996790. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 | |
| 674 3 16000772 SNP-3.15999418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 675 3 16001391 SNP-3.16000037. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 676 3 16001554 SNP-3.16000200. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 | |
| 677 3 16012630 SNP-3.16011276. A G . . PR;EFF=splice_region_variant(LOW|||c.478T>C|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1),intron_variant(MODIFIER|||c.478-3T>C|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 | |
| 678 3 16012660 SNP-3.16011306. C A . . PR;EFF=intron_variant(MODIFIER|||c.478-33G>T|899|LOC_Os03g27870|protein_coding|CODING|LOC_Os03g27870.1|6|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 679 3 16019024 SNP-3.16017670. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 | |
| 680 3 16019413 SNP-3.16018059. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 | |
| 681 3 16020114 SNP-3.16018760. A G . . PR;EFF=intron_variant(MODIFIER|||c.214+211A>G|148|LOC_Os03g27890|protein_coding|CODING|LOC_Os03g27890.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 | |
| 682 3 16021654 SNP-3.16020300. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp86Asp/c.256A>G|148|LOC_Os03g27890|protein_coding|CODING|LOC_Os03g27890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 | |
| 683 3 16022203 SNP-3.16020849. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. | |
| 684 3 16023464 SNP-3.16022110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 | |
| 685 3 16026232 SNP-3.16024878. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 686 3 16030064 SNP-3.16028710. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcG|p.Ser1031Ser/c.3093A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 687 3 16031042 SNP-3.16029688. A G . . PR;EFF=intron_variant(MODIFIER|||c.3461-171A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|5|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 688 3 16031456 SNP-3.16030102. A G . . PR;EFF=intron_variant(MODIFIER|||c.3618+86A>G|1326|LOC_Os03g27910|protein_coding|CODING|LOC_Os03g27910.1|6|1) GT 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 | |
| 689 3 16034617 SNP-3.16033263. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 | |
| 690 3 16035032 SNP-3.16033678. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 | |
| 691 3 16038010 SNP-3.16036656. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 692 3 16039908 SNP-3.16038554. C A . . PR;EFF=intron_variant(MODIFIER|||c.150+456C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 693 3 16040124 SNP-3.16038770. A G . . PR;EFF=intron_variant(MODIFIER|||c.150+672A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 | |
| 694 3 16041706 SNP-3.16040352. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys232Lys/c.694C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 695 3 16041891 SNP-3.16040537. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcG|p.Ser293Ser/c.879A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 696 3 16043518 SNP-3.16042164. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccC/ccA|p.Pro543Pro/c.1629C>A|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|9|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 697 3 16044322 SNP-3.16042968. A G . . PR;EFF=intron_variant(MODIFIER|||c.1732-168A>G|690|LOC_Os03g27930|protein_coding|CODING|LOC_Os03g27930.1|9|1) GT 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 698 3 16046247 SNP-3.16044893. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 | |
| 699 3 16049910 SNP-3.16048556. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 700 3 16051156 SNP-3.16049802. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 701 3 16052453 SNP-3.16051099. A G . . PR;EFF=intron_variant(MODIFIER|||c.272+128A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.365+35A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 702 3 16052936 SNP-3.16051582. A G . . PR;EFF=intron_variant(MODIFIER|||c.272+611A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.365+518A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 703 3 16053713 SNP-3.16052359. A G . . PR;EFF=intron_variant(MODIFIER|||c.273-744A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.366-744A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 704 3 16054009 SNP-3.16052655. A G . . PR;EFF=intron_variant(MODIFIER|||c.273-448A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|3|1),intron_variant(MODIFIER|||c.366-448A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|3|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 705 3 16056312 SNP-3.16054958. C A . . PR;EFF=intron_variant(MODIFIER|||c.794+91C>A|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|8|1),intron_variant(MODIFIER|||c.701+91C>A|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 706 3 16057891 SNP-3.16056537. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctt/Gtt|p.Leu521Val/c.1561A>G|529|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.1|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ctt/Gtt|p.Leu490Val/c.1468A>G|498|LOC_Os03g27950|protein_coding|CODING|LOC_Os03g27950.2|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 707 3 16058615 SNP-3.16057261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 708 3 16059332 SNP-3.16057978. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 709 3 16059864 SNP-3.16058510. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 710 3 16070188 SNP-3.16068834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 711 3 16072044 SNP-3.16070690. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg347His/c.1040C>A|492|LOC_Os03g27980|protein_coding|CODING|LOC_Os03g27980.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 712 3 16074898 SNP-3.16073544. A G . . PR;EFF=intron_variant(MODIFIER|||c.1423-152T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|11|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 | |
| 713 3 16075626 SNP-3.16074272. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His354Leu/c.1061G>T|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 714 3 16075691 SNP-3.16074337. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcC|p.Ser332Ser/c.996T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|10|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 715 3 16076230 SNP-3.16074876. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gaT/gaC|p.Asp244Asp/c.732T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|9|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 716 3 16076306 SNP-3.16074952. C A . . PR;EFF=intron_variant(MODIFIER|||c.693-37G>T|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|8|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 717 3 16078859 SNP-3.16077505. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||216|c.-216T>C|753|LOC_Os03g27990|protein_coding|CODING|LOC_Os03g27990.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 718 3 16080275 SNP-3.16078921. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 | |
| 719 3 16081791 SNP-3.16080437. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 720 3 16081893 SNP-3.16080539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 721 3 16082458 SNP-3.16081104. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 722 3 16084305 SNP-3.16082951. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 723 3 16085089 SNP-3.16083735. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 724 3 16085268 SNP-3.16083914. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 725 3 16085337 SNP-3.16083983. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 726 3 16086121 SNP-3.16084767. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 | |
| 727 3 16087398 SNP-3.16086044. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 | |
| 728 3 16088494 SNP-3.16087140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 | |
| 729 3 16092466 SNP-3.16091112. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 | |
| 730 3 16097968 SNP-3.16096614. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taG|p.Tyr742*/c.2226A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g28010|LOC_Os03g28010|1|1.00);NMD=(LOC_Os03g28010|LOC_Os03g28010|1|1.00) GT 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 731 3 16099002 SNP-3.16097648. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttC/ttG|p.Phe987Leu/c.2961A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 | |
| 732 3 16100900 SNP-3.16099546. C A . . PR;EFF=intron_variant(MODIFIER|||c.3907-279C>A|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|10|1) GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 | |
| 733 3 16102230 SNP-3.16100876. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val1653Gly/c.4958A>G|1975|LOC_Os03g28010|protein_coding|CODING|LOC_Os03g28010.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 734 3 16109853 SNP-3.16108499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 735 3 16110799 SNP-3.16109445. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 736 3 16111699 SNP-3.16110345. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 | |
| 737 3 16112054 SNP-3.16110700. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 | |
| 738 3 16115076 SNP-3.16113722. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGc/gCc|p.Gly33Ala/c.98T>C|155|LOC_Os03g28030|protein_coding|CODING|LOC_Os03g28030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 | |
| 739 3 16116032 SNP-3.16114678. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. | |
| 740 3 16116761 SNP-3.16115407. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 | |
| 741 3 16117174 SNP-3.16115820. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 | |
| 742 3 16118924 SNP-3.16117570. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 743 3 16121614 SNP-3.16120260. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 744 3 16123637 SNP-3.16122283. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 745 3 16124670 SNP-3.16123316. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. ./. 0/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 746 3 16126350 SNP-3.16124996. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 747 3 16127787 SNP-3.16126433. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 748 3 16128346 SNP-3.16126992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 749 3 16131077 SNP-3.16129723. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala163Ala/c.487A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 | |
| 750 3 16132391 SNP-3.16131037. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala491Ala/c.1471A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 751 3 16133002 SNP-3.16131648. A G . . PR;EFF=synonymous_variant(LOW||caG/caG|p.Gln667Gln/c.2001A>G|764|LOC_Os03g28060|protein_coding|CODING|LOC_Os03g28060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 752 3 16135246 SNP-3.16133892. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 753 3 16135358 SNP-3.16134004. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 754 3 16139308 SNP-3.16137954. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 755 3 16140836 SNP-3.16139482. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 756 3 16142450 SNP-3.16141096. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 757 3 16142960 SNP-3.16141606. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 758 3 16146021 SNP-3.16144667. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 759 3 16147747 SNP-3.16146393. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 760 3 16147908 SNP-3.16146554. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 | |
| 761 3 16149035 SNP-3.16147681. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 762 3 16150473 SNP-3.16149119. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 | |
| 763 3 16155821 SNP-3.16154467. A G . . PR;EFF=splice_donor_variant(HIGH|||c.60T>C|365|LOC_Os03g28100|protein_coding|CODING|LOC_Os03g28100.1|1|1),intron_variant(MODIFIER|||c.59+1T>C|365|LOC_Os03g28100|protein_coding|CODING|LOC_Os03g28100.1|1|1);LOF=(LOC_Os03g28100|LOC_Os03g28100|1|1.00) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 | |
| 764 3 16156517 SNP-3.16155163. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 | |
| 765 3 16158960 SNP-3.16157606. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgC|p.Arg1273Arg/c.3819T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|4|1) GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 766 3 16158961 SNP-3.16157607. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg1273Pro/c.3818T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 1/1 | |
| 767 3 16159744 SNP-3.16158390. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aTt|p.Asn1032Ile/c.3095G>T|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 768 3 16159923 SNP-3.16158569. A G . . PR;EFF=synonymous_variant(LOW||gaC/gaC|p.Asp972Asp/c.2916T>C|1303|LOC_Os03g28110|protein_coding|CODING|LOC_Os03g28110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 769 3 16163231 SNP-3.16161877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 770 3 16163777 SNP-3.16162423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 771 3 16164237 SNP-3.16162883. C A . . PR;EFF=intron_variant(MODIFIER|||c.234-11G>T|156|LOC_Os03g28120|protein_coding|CODING|LOC_Os03g28120.1|2|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 772 3 16167564 SNP-3.16166210. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 773 3 16167942 SNP-3.16166588. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. | |
| 774 3 16168255 SNP-3.16166901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 | |
| 775 3 16169101 SNP-3.16167747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 | |
| 776 3 16173019 SNP-3.16171665. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 777 3 16173556 SNP-3.16172202. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 778 3 16173793 SNP-3.16172439. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 779 3 16175848 SNP-3.16174494. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 780 3 16177665 SNP-3.16176311. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 781 3 16178411 SNP-3.16177057. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. | |
| 782 3 16180766 SNP-3.16179412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 | |
| 783 3 16184927 SNP-3.16183573. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaC/gaT|p.Asp1583Asp/c.4749G>T|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 784 3 16185673 SNP-3.16184319. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala1335Pro/c.4003T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 785 3 16186851 SNP-3.16185497. A G . . PR;EFF=intron_variant(MODIFIER|||c.3408+265T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|8|1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 | |
| 786 3 16188584 SNP-3.16187230. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cCt|p.His773Pro/c.2318T>C|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 787 3 16190367 SNP-3.16189013. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccT|p.Pro569Pro/c.1707G>T|1818|LOC_Os03g28140|protein_coding|CODING|LOC_Os03g28140.1|4|1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 788 3 16195500 SNP-3.16194146. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 789 3 16196752 SNP-3.16195398. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 790 3 16196939 SNP-3.16195585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 791 3 16197579 SNP-3.16196225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 792 3 16197647 SNP-3.16196293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 793 3 16199091 SNP-3.16197737. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 794 3 16202379 SNP-3.16201026. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 795 3 16202825 SNP-3.16201472. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 | |
| 796 3 16203548 SNP-3.16202195. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 797 3 16204694 SNP-3.16203341. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 798 3 16204817 SNP-3.16203464. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 799 3 16205976 SNP-3.16204623. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 | |
| 800 3 16207401 SNP-3.16206048. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 801 3 16208608 SNP-3.16207255. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 | |
| 802 3 16210681 SNP-3.16209328. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 803 3 16211192 SNP-3.16209839. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 804 3 16211757 SNP-3.16210404. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 805 3 16212460 SNP-3.16211107. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 806 3 16212633 SNP-3.16211280. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 807 3 16214847 SNP-3.16213494. A G . . PR;EFF=intron_variant(MODIFIER|||c.209+12A>G|78|LOC_Os03g28170|protein_coding|CODING|LOC_Os03g28170.1|2|1) GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 808 3 16216727 SNP-3.16215374. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 809 3 16216860 SNP-3.16215507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 | |
| 810 3 16221494 SNP-3.16220141. A G . . PR;EFF=intron_variant(MODIFIER|||c.216-181T>C|165|LOC_Os03g28180|protein_coding|CODING|LOC_Os03g28180.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 811 3 16221513 SNP-3.16220160. A G . . PR;EFF=intron_variant(MODIFIER|||c.216-200T>C|165|LOC_Os03g28180|protein_coding|CODING|LOC_Os03g28180.1|1|1) GT 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. | |
| 812 3 16222648 SNP-3.16221295. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 813 3 16225523 SNP-3.16224170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 | |
| 814 3 16227575 SNP-3.16226222. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 | |
| 815 3 16228073 SNP-3.16226720. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcg/Ccg|p.Ala40Pro/c.118T>C|177|LOC_Os03g28190|protein_coding|CODING|LOC_Os03g28190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 | |
| 816 3 16241227 SNP-3.16239874. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acA/acT|p.Thr115Thr/c.345G>T|293|LOC_Os03g28230|protein_coding|CODING|LOC_Os03g28230.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 817 3 16244812 SNP-3.16243459. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 818 3 16246646 SNP-3.16245293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 819 3 16248317 SNP-3.16246964. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 | |
| 820 3 16248339 SNP-3.16246986. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 821 3 16249091 SNP-3.16247738. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 | |
| 822 3 16249376 SNP-3.16248023. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 | |
| 823 3 16249805 SNP-3.16248452. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 824 3 16249928 SNP-3.16248575. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 825 3 16250175 SNP-3.16248822. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. | |
| 826 3 16250281 SNP-3.16248928. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 | |
| 827 3 16251439 SNP-3.16250086. A G . . PR;EFF=intron_variant(MODIFIER|||c.196-443T>C|145|LOC_Os03g28260|protein_coding|CODING|LOC_Os03g28260.1|1|1) GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 | |
| 828 3 16252381 SNP-3.16251028. C A . . PR;EFF=intron_variant(MODIFIER|||c.195+142G>T|145|LOC_Os03g28260|protein_coding|CODING|LOC_Os03g28260.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 829 3 16253135 SNP-3.16251782. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 830 3 16255263 SNP-3.16253910. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 831 3 16257142 SNP-3.16255789. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||104|c.*104T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 832 3 16258144 SNP-3.16256791. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg1274Cys/c.3820G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 833 3 16258485 SNP-3.16257132. C A . . PR;EFF=intron_variant(MODIFIER|||c.3708+199G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|7|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 834 3 16258806 SNP-3.16257453. A G . . PR;EFF=intron_variant(MODIFIER|||c.3607-21T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 | |
| 835 3 16258883 SNP-3.16257530. A G . . PR;EFF=intron_variant(MODIFIER|||c.3607-98T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1) GT 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 | |
| 836 3 16259008 SNP-3.16257655. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Aga/Cga|p.Arg1197Arg/c.3589T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 | |
| 837 3 16260428 SNP-3.16259075. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tCc|p.Tyr1032Ser/c.3095T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 | |
| 838 3 16260660 SNP-3.16259307. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcc/Ccc|p.Ala955Pro/c.2863T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 | |
| 839 3 16263079 SNP-3.16261725. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg684Pro/c.2051T>C|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 840 3 16264069 SNP-3.16262715. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gTg|p.Glu354Val/c.1061G>T|1424|LOC_Os03g28270|protein_coding|CODING|LOC_Os03g28270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 841 3 16266636 SNP-3.16265282. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 842 3 16268544 SNP-3.16267190. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 843 3 16269971 SNP-3.16268617. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln105Glu/c.313A>G|144|LOC_Os03g28280|protein_coding|CODING|LOC_Os03g28280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 844 3 16270468 SNP-3.16269114. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 845 3 16271615 SNP-3.16270261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 846 3 16275105 SNP-3.16273751. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 847 3 16275267 SNP-3.16273913. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 848 3 16276606 SNP-3.16275252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 849 3 16277496 SNP-3.16276142. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 850 3 16278608 SNP-3.16277254. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 851 3 16279097 SNP-3.16277743. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 852 3 16279194 SNP-3.16277840. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 853 3 16283872 SNP-3.16282518. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Gca|p.Ser192Ala/c.574A>G|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Tca/Gca|p.Ser192Ala/c.574A>G|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 | |
| 854 3 16283978 SNP-3.16282624. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile227Asn/c.680C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile227Asn/c.680C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 | |
| 855 3 16284368 SNP-3.16283014. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His357His/c.1070C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cAt/cAt|p.His357His/c.1070C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 | |
| 856 3 16284457 SNP-3.16283103. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cta/Gta|p.Leu387Val/c.1159A>G|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Cta/Gta|p.Leu387Val/c.1159A>G|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 857 3 16289377 SNP-3.16288023. C A . . PR;EFF=intron_variant(MODIFIER|||c.2399-650C>A|859|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.1|7|1),intron_variant(MODIFIER|||c.*926-650C>A|635|LOC_Os03g28300|protein_coding|CODING|LOC_Os03g28300.2|5|1) GT ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 858 3 16293444 SNP-3.16292090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 859 3 16294316 SNP-3.16292962. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gTt|p.Ala672Val/c.2015G>T|748|LOC_Os03g28310|protein_coding|CODING|LOC_Os03g28310.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 860 3 16296108 SNP-3.16294754. C A . . PR;EFF=synonymous_variant(LOW||Tct/Tct|p.Ser75Ser/c.223G>T|748|LOC_Os03g28310|protein_coding|CODING|LOC_Os03g28310.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 861 3 16297362 SNP-3.16296008. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 862 3 16298293 SNP-3.16296939. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 863 3 16300464 SNP-3.16299110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 864 3 16301802 SNP-3.16300448. C A . . PR;EFF=synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|15|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgT/cgT|p.Arg784Arg/c.2352G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||926|c.*832G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 | |
| 865 3 16305363 SNP-3.16304009. C A . . PR;EFF=intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),intron_variant(MODIFIER|||c.111-144G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1),intron_variant(MODIFIER|||c.111-144G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 866 3 16305784 SNP-3.16304430. A G . . PR;EFF=intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),intron_variant(MODIFIER|||c.110+164T>C|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1),intron_variant(MODIFIER|||c.110+164T>C|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 867 3 16306048 SNP-3.16304694. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.2|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.3|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|2|1),missense_variant(MODERATE|MISSENSE|Gct/Tct|p.Ala4Ser/c.10G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.4|1|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 | |
| 868 3 16307341 SNP-3.16305987. C A . . PR;EFF=intron_variant(MODIFIER|||c.-31+192G>T|816|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.1|1|1),intron_variant(MODIFIER|||c.-31+192G>T|567|LOC_Os03g28330|protein_coding|CODING|LOC_Os03g28330.5|1|1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 869 3 16307741 SNP-3.16306387. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 870 3 16308213 SNP-3.16306859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 | |
| 871 3 16308525 SNP-3.16307171. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 872 3 16309467 SNP-3.16308113. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 873 3 16310777 SNP-3.16309423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 874 3 16310932 SNP-3.16309578. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 875 3 16314149 SNP-3.16312795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 876 3 16315527 SNP-3.16314173. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 | |
| 877 3 16317559 SNP-3.16316205. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 878 3 16321861 SNP-3.16320507. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 879 3 16322325 SNP-3.16320971. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 | |
| 880 3 16324424 SNP-3.16323070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 881 3 16325371 SNP-3.16324017. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 882 3 16326374 SNP-3.16325020. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 883 3 16330389 SNP-3.16329035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 884 3 16331393 SNP-3.16330039. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg40Arg/c.119A>G|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 | |
| 885 3 16331681 SNP-3.16330327. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr136Arg/c.407A>G|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 | |
| 886 3 16331717 SNP-3.16330363. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr148Tyr/c.443C>A|266|LOC_Os03g28350|protein_coding|CODING|LOC_Os03g28350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 887 3 16333225 SNP-3.16331871. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 888 3 16333844 SNP-3.16332490. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 | |
| 889 3 16334375 SNP-3.16333021. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtA/gtC|p.Val309Val/c.927T>C|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 890 3 16334945 SNP-3.16333591. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttT|p.Leu203Phe/c.609G>T|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 891 3 16338196 SNP-3.16336842. C A . . PR;EFF=intron_variant(MODIFIER|||c.161+238G>T|352|LOC_Os03g28360|protein_coding|CODING|LOC_Os03g28360.1|1|1) GT ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 892 3 16339322 SNP-3.16337968. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 893 3 16340091 SNP-3.16338737. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 | |
| 894 3 16340649 SNP-3.16339295. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 895 3 16341869 SNP-3.16340515. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 896 3 16342531 SNP-3.16341177. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 897 3 16342579 SNP-3.16341225. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 898 3 16342932 SNP-3.16341578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 899 3 16345758 SNP-3.16344404. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 900 3 16346000 SNP-3.16344646. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 | |
| 901 3 16349441 SNP-3.16348087. A G . . PR;EFF=synonymous_variant(LOW||gGc/gGc|p.Gly849Gly/c.2546A>G|1275|LOC_Os03g28370|protein_coding|CODING|LOC_Os03g28370.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 902 3 16352546 SNP-3.16351192. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 | |
| 903 3 16353769 SNP-3.16352415. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aaa/Taa|p.Lys511*/c.1531G>T|704|LOC_Os03g28380|protein_coding|CODING|LOC_Os03g28380.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g28380|LOC_Os03g28380|1|1.00);NMD=(LOC_Os03g28380|LOC_Os03g28380|1|1.00) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 904 3 16356870 SNP-3.16355516. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 | |
| 905 3 16359129 SNP-3.16357775. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tAt|p.Phe101Tyr/c.302C>A|170|LOC_Os03g28389|protein_coding|CODING|LOC_Os03g28389.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||686|c.*686G>T|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 | |
| 906 3 16359580 SNP-3.16358226. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||235|c.*235G>T|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 | |
| 907 3 16359798 SNP-3.16358444. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||17|c.*17T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 | |
| 908 3 16361579 SNP-3.16360225. A G . . PR;EFF=intron_variant(MODIFIER|||c.158+329T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 | |
| 909 3 16361683 SNP-3.16360329. A G . . PR;EFF=intron_variant(MODIFIER|||c.158+225T>C|187|LOC_Os03g28400|protein_coding|CODING|LOC_Os03g28400.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 | |
| 910 3 16366254 SNP-3.16383185. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 911 3 16368468 SNP-3.16380971. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 912 3 16379310 SNP-3.16370129. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 913 3 16394336 SNP-3.16392980. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 914 3 16399536 SNP-3.16398180. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 915 3 16399742 SNP-3.16398386. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 | |
| 916 3 16400147 SNP-3.16398791. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 | |
| 917 3 16400449 SNP-3.16399093. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 | |
| 918 3 16400652 SNP-3.16399296. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gTg|p.Ala102Val/c.305G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 | |
| 919 3 16400670 SNP-3.16399314. C A . . PR;EFF=synonymous_variant(LOW||gTg/gTg|p.Val96Val/c.287G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 920 3 16400718 SNP-3.16399362. C A . . PR;EFF=synonymous_variant(LOW||cTa/cTa|p.Leu80Leu/c.239G>T|125|LOC_Os03g28920|protein_coding|CODING|LOC_Os03g28920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 | |
| 921 3 16401184 SNP-3.16399828. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 922 3 16407522 SNP-3.16406166. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 923 3 16410397 SNP-3.16409041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. | |
| 924 3 16411046 SNP-3.16409690. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 | |
| 925 3 16412003 SNP-3.16410647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 926 3 16414648 SNP-3.16413292. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 | |
| 927 3 16415105 SNP-3.16413749. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 | |
| 928 3 16417170 SNP-3.16415814. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg273Arg/c.817T>C|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 | |
| 929 3 16417403 SNP-3.16416047. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gTt|p.Asp195Val/c.584G>T|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 930 3 16417511 SNP-3.16416155. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp159Ala/c.476T>C|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 | |
| 931 3 16417802 SNP-3.16416446. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aTg|p.Thr62Met/c.185G>T|445|LOC_Os03g28950|protein_coding|CODING|LOC_Os03g28950.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 932 3 16419503 SNP-3.16418147. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 933 3 16420292 SNP-3.16418936. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 934 3 16421225 SNP-3.16419869. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 935 3 16422830 SNP-3.16421474. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 936 3 16425653 SNP-3.16424297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 937 3 16427008 SNP-3.16425652. C A . . PR;EFF=intron_variant(MODIFIER|||c.84+99C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|1|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 | |
| 938 3 16428179 SNP-3.16426823. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro83Pro/c.249C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 939 3 16431723 SNP-3.16430367. A G . . PR;EFF=intron_variant(MODIFIER|||c.967-253A>G|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|12|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 940 3 16432162 SNP-3.16430806. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala360Ala/c.1080C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 941 3 16433028 SNP-3.16431672. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp433Glu/c.1299C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 942 3 16437602 SNP-3.16436246. A G . . PR;EFF=intron_variant(MODIFIER|||c.2032-114A>G|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|22|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 943 3 16439107 SNP-3.16437751. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr797Thr/c.2391C>A|799|LOC_Os03g28960|protein_coding|CODING|LOC_Os03g28960.1|26|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 | |
| 944 3 16440472 SNP-3.16439116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 945 3 16442247 SNP-3.16440891. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 | |
| 946 3 16442748 SNP-3.16441392. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 947 3 16444005 SNP-3.16442649. C A . . PR;EFF=intron_variant(MODIFIER|||c.279-297G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 | |
| 948 3 16444551 SNP-3.16443195. A G . . PR;EFF=synonymous_variant(LOW||gCa/gCa|p.Ala71Ala/c.212T>C|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 949 3 16444877 SNP-3.16443521. C A . . PR;EFF=intron_variant(MODIFIER|||c.184-298G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 | |
| 950 3 16445595 SNP-3.16444239. C A . . PR;EFF=intron_variant(MODIFIER|||c.183+123G>T|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1) GT 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 | |
| 951 3 16445816 SNP-3.16444460. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggg/Cgg|p.Gly29Arg/c.85T>C|128|LOC_Os03g28969|protein_coding|CODING|LOC_Os03g28969.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 | |
| 952 3 16447361 SNP-3.16446005. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 953 3 16450518 SNP-3.16449162. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val351Val/c.1053A>G|744|LOC_Os03g28980|protein_coding|CODING|LOC_Os03g28980.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 954 3 16452818 SNP-3.16451462. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 | |
| 955 3 16454535 SNP-3.16453179. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 956 3 16461364 SNP-3.16460008. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 | |
| 957 3 16462377 SNP-3.16461021. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 958 3 16463564 SNP-3.16462208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 959 3 16464250 SNP-3.16462894. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 960 3 16464819 SNP-3.16463463. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 961 3 16465142 SNP-3.16463786. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 962 3 16465232 SNP-3.16463876. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 963 3 16465920 SNP-3.16464564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 | |
| 964 3 16469586 SNP-3.16468230ac. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 965 3 16470346 SNP-3.16468990. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 966 3 16473434 SNP-3.16472078. A G . . PR;EFF=intron_variant(MODIFIER|||c.1738-181T>C|921|LOC_Os03g29020|protein_coding|CODING|LOC_Os03g29020.1|6|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 | |
| 967 3 16476167 SNP-3.16474811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 968 3 16476452 SNP-3.16475096. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 | |
| 969 3 16477921 SNP-3.16476565. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 970 3 16478110 SNP-3.16476754. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 971 3 16478160 SNP-3.16476804. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 972 3 16478593 SNP-3.16477237. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 | |
| 973 3 16481773 SNP-3.16480417. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 | |
| 974 3 16483495 SNP-3.16482139. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 | |
| 975 3 16494653 SNP-3.16493297. A G . . PR;EFF=splice_region_variant(LOW|||c.266T>C|767|LOC_Os03g29035|protein_coding|CODING|LOC_Os03g29035.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||aCg/aCg|p.Thr89Thr/c.266T>C|767|LOC_Os03g29035|protein_coding|CODING|LOC_Os03g29035.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 | |
| 976 3 16496539 SNP-3.16495183. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 | |
| 977 3 16500736 SNP-3.16499380. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 978 3 16501781 SNP-3.16500425. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 979 3 16506045 SNP-3.16504689. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 980 3 16506581 SNP-3.16505225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 | |
| 981 3 16506692 SNP-3.16505336. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 982 3 16509058 SNP-3.16507702. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 983 3 16509658 SNP-3.16508302. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 | |
| 984 3 16510248 SNP-3.16508892. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 985 3 16510365 SNP-3.16509009. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. ./. | |
| 986 3 16510486 SNP-3.16509130. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 987 3 16512835 SNP-3.16511479. C A . . PR;EFF=synonymous_variant(LOW||gaA/gaA|p.Glu54Glu/c.162C>A|114|LOC_Os03g29065|protein_coding|CODING|LOC_Os03g29065.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 988 3 16515197 SNP-3.16513841. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 989 3 16516237 SNP-3.16514881. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 | |
| 990 3 16518919 SNP-3.16517563. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser678Ser/c.2034A>G|689|LOC_Os03g29075|protein_coding|CODING|LOC_Os03g29075.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 | |
| 991 3 16521187 SNP-3.16519831. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn515Lys/c.1545C>A|1006|LOC_Os03g29085|protein_coding|CODING|LOC_Os03g29085.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 | |
| 992 3 16523463 SNP-3.16522107. A G . . PR;EFF=intron_variant(MODIFIER|||c.1880-259T>C|653|LOC_Os03g29100|protein_coding|CODING|LOC_Os03g29100.1|9|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 | |
| 993 3 16524472 SNP-3.16523116. A G . . PR;EFF=intron_variant(MODIFIER|||c.1451+34T>C|653|LOC_Os03g29100|protein_coding|CODING|LOC_Os03g29100.1|7|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 | |
| 994 3 16528169 SNP-3.16526813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 | |
| 995 3 16528623 SNP-3.16527267. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 | |
| 996 3 16529883 SNP-3.16528527. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 997 3 16530467 SNP-3.16529111. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 | |
| 998 3 16530583 SNP-3.16529227. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 999 3 16530591 SNP-3.16529235. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1000 3 16530801 SNP-3.16529445. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 1001 3 16537232 SNP-3.16535876. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn653Asn/c.1959G>T|863|LOC_Os03g29120|protein_coding|CODING|LOC_Os03g29120.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1002 3 16548895 SNP-3.16547539. A G . . PR;EFF=intron_variant(MODIFIER|||c.340+188A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1003 3 16548979 SNP-3.16547623. A G . . PR;EFF=intron_variant(MODIFIER|||c.340+272A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1004 3 16549393 SNP-3.16548037. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-384A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 | |
| 1005 3 16549481 SNP-3.16548125. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-296A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1006 3 16549648 SNP-3.16548292. C A . . PR;EFF=intron_variant(MODIFIER|||c.341-129C>A|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1007 3 16549691 SNP-3.16548335. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-86A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 | |
| 1008 3 16549728 SNP-3.16548372. A G . . PR;EFF=intron_variant(MODIFIER|||c.341-49A>G|194|LOC_Os03g29140|protein_coding|CODING|LOC_Os03g29140.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 | |
| 1009 3 16550325 SNP-3.16548969. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 1010 3 16550359 SNP-3.16549003. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 1011 3 16550385 SNP-3.16549029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1012 3 16550983 SNP-3.16549627. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 1013 3 16551258 SNP-3.16549902. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 | |
| 1014 3 16552163 SNP-3.16550807. C A . . PR;EFF=intron_variant(MODIFIER|||c.286+427C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.286+427C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.286+427C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 | |
| 1015 3 16552494 SNP-3.16551138. C A . . PR;EFF=intron_variant(MODIFIER|||c.286+758C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.286+758C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.286+758C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1016 3 16556476 SNP-3.16555120. C A . . PR;EFF=intron_variant(MODIFIER|||c.287-471C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|1|1),intron_variant(MODIFIER|||c.287-471C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|1|1),intron_variant(MODIFIER|||c.287-471C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|1|1) GT 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1017 3 16557632 SNP-3.16556276. A G . . PR;EFF=intron_variant(MODIFIER|||c.377-564A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|2|1),intron_variant(MODIFIER|||c.377-564A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|2|1),intron_variant(MODIFIER|||c.377-564A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|2|1) GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 | |
| 1018 3 16559052 SNP-3.16557696. A G . . PR;EFF=intron_variant(MODIFIER|||c.511-218A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|3|1),intron_variant(MODIFIER|||c.511-218A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|3|1),intron_variant(MODIFIER|||c.511-218A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|3|1) GT 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 | |
| 1019 3 16559774 SNP-3.16558418. A G . . PR;EFF=intron_variant(MODIFIER|||c.669+346A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|4|1),intron_variant(MODIFIER|||c.669+346A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|4|1),intron_variant(MODIFIER|||c.669+346A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|4|1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1020 3 16560375 SNP-3.16559019. A G . . PR;EFF=intron_variant(MODIFIER|||c.670-226A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|4|1),intron_variant(MODIFIER|||c.670-226A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|4|1),intron_variant(MODIFIER|||c.670-226A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|4|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 | |
| 1021 3 16560612 SNP-3.16559256. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly227Gly/c.681A>G|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1022 3 16560855 SNP-3.16559499. C A . . PR;EFF=synonymous_variant(LOW||ttA/ttA|p.Leu284Leu/c.852C>A|291|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||114|c.*114C>A|269|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.2|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.792+132C>A|266|LOC_Os03g29150|protein_coding|CODING|LOC_Os03g29150.3|5|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1023 3 16562821 SNP-3.16561465. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 | |
| 1024 3 16564271 SNP-3.16562915. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 | |
| 1025 3 16566367 SNP-3.16565011. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 | |
| 1026 3 16566848 SNP-3.16565492. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 1027 3 16569869 SNP-3.16568513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 | |
| 1028 3 16574681 SNP-3.16573325. C A . . PR;EFF=splice_region_variant(LOW|||c.769C>A|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|5|1),splice_region_variant(LOW|||c.769C>A|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|5|1),intron_variant(MODIFIER|||c.769-3C>A|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|5|1),intron_variant(MODIFIER|||c.769-3C>A|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|5|1) GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1029 3 16576245 SNP-3.16574889. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln339Glu/c.1015A>G|561|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln339Glu/c.1015A>G|474|LOC_Os03g29170|protein_coding|CODING|LOC_Os03g29170.2|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1030 3 16586851 SNP-3.16585495. C A . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||51|LOC_Os03g29184|protein_coding|CODING|LOC_Os03g29184.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||2|c.-2G>T|51|LOC_Os03g29184|protein_coding|CODING|LOC_Os03g29184.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 | |
| 1031 3 16589439 SNP-3.16588083. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 1032 3 16589518 SNP-3.16588162. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 | |
| 1033 3 16589605 SNP-3.16588249. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 1034 3 16589757 SNP-3.16588401. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 | |
| 1035 3 16590643 SNP-3.16589287. A G . . PR;EFF=intron_variant(MODIFIER|||c.78+295A>G|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|1|1),intron_variant(MODIFIER|||c.78+295A>G|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1036 3 16591121 SNP-3.16589765. A G . . PR;EFF=intron_variant(MODIFIER|||c.78+773A>G|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|1|1),intron_variant(MODIFIER|||c.78+773A>G|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|1|1) GT ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 | |
| 1037 3 16594838 SNP-3.16593482. C A . . PR;EFF=intron_variant(MODIFIER|||c.1111-150C>A|588|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.1|4|1),intron_variant(MODIFIER|||c.1054-150C>A|569|LOC_Os03g29190|protein_coding|CODING|LOC_Os03g29190.2|3|1) GT 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 | |
| 1038 3 16598761 SNP-3.16597405. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 1039 3 16599384 SNP-3.16598028. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1040 3 16600374 SNP-3.16599018. A G . . PR;EFF=intron_variant(MODIFIER|||c.97-380T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1041 3 16600820 SNP-3.16599464. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+593G>T|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1042 3 16600952 SNP-3.16599596. A G . . PR;EFF=intron_variant(MODIFIER|||c.96+461T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 | |
| 1043 3 16601019 SNP-3.16599663. C A . . PR;EFF=intron_variant(MODIFIER|||c.96+394G>T|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1044 3 16601645 SNP-3.16600289. A G . . PR;EFF=intron_variant(MODIFIER|||c.60+53T>C|163|LOC_Os03g29194|protein_coding|CODING|LOC_Os03g29194.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1045 3 16602272 SNP-3.16600916. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 | |
| 1046 3 16608415 SNP-3.16607059. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly235Gly/c.703A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 | |
| 1047 3 16608823 SNP-3.16607467. A G . . PR;EFF=intron_variant(MODIFIER|||c.864+247A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 1048 3 16609108 SNP-3.16607752. C A . . PR;EFF=intron_variant(MODIFIER|||c.865-175C>A|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|2|1) GT 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 | |
| 1049 3 16609519 SNP-3.16608163. A G . . PR;EFF=intron_variant(MODIFIER|||c.1009+59A>G|517|LOC_Os03g29212|protein_coding|CODING|LOC_Os03g29212.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 | |
| 1050 3 16612026 SNP-3.16610670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1051 3 16612581 SNP-3.16611225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 | |
| 1052 3 16612603 SNP-3.16611247. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 1053 3 16613494 SNP-3.16612138. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 | |
| 1054 3 16614917 SNP-3.16613561. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1055 3 16626255 SNP-3.16624899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1056 3 16626456 SNP-3.16625100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1057 3 16627656 SNP-3.16626300. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1058 3 16629653 SNP-3.16628297. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcG|p.Ser106Ser/c.318A>G|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|2|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 | |
| 1059 3 16629905 SNP-3.16628549. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acA|p.Thr190Thr/c.570C>A|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1060 3 16630371 SNP-3.16629015. A G . . PR;EFF=synonymous_variant(LOW||gGt/gGt|p.Gly315Gly/c.944A>G|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 | |
| 1061 3 16630882 SNP-3.16629526. C A . . PR;EFF=intron_variant(MODIFIER|||c.1075-247C>A|581|LOC_Os03g29240|protein_coding|CODING|LOC_Os03g29240.1|3|1) GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 1062 3 16633913 SNP-3.16632557. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 | |
| 1063 3 16635723 SNP-3.16634367. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1064 3 16636564 SNP-3.16635208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1065 3 16636964 SNP-3.16635608. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1066 3 16638512 SNP-3.16637156. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1067 3 16638642 SNP-3.16637286. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 | |
| 1068 3 16639411 SNP-3.16638055. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1069 3 16642376 SNP-3.16641020. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 | |
| 1070 3 16643300 SNP-3.16641944. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 | |
| 1071 3 16643982 SNP-3.16642626. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1072 3 16646620 SNP-3.16645264. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1073 3 16647194 SNP-3.16645838. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1074 3 16647665 SNP-3.16646309. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1075 3 16650006 SNP-3.16648650. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 | |
| 1076 3 16650432 SNP-3.16649076. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 | |
| 1077 3 16652819 SNP-3.16651463. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 | |
| 1078 3 16654501 SNP-3.16653145. C A . . PR;EFF=intron_variant(MODIFIER|||c.-1+31C>A|226|LOC_Os03g29260|protein_coding|CODING|LOC_Os03g29260.2|1|1) GT 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1079 3 16655352 SNP-3.16653996. C A . . PR;EFF=intron_variant(MODIFIER|||c.87-15C>A|226|LOC_Os03g29260|protein_coding|CODING|LOC_Os03g29260.2|2|1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 1080 3 16659023 SNP-3.16657667. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 | |
| 1081 3 16659994 SNP-3.16658638. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 | |
| 1082 3 16661316 SNP-3.16659960. A G . . PR;EFF=intron_variant(MODIFIER|||c.838-331T>C|355|LOC_Os03g29270|protein_coding|CODING|LOC_Os03g29270.1|3|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 | |
| 1083 3 16662852 SNP-3.16661496. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcC|p.Ser11Ser/c.33T>C|355|LOC_Os03g29270|protein_coding|CODING|LOC_Os03g29270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 1084 3 16668298 SNP-3.16666942. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1085 3 16670653 SNP-3.16669297. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1086 3 16671466 SNP-3.16670110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1087 3 16671695 SNP-3.16670339. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. | |
| 1088 3 16679391 SNP-3.16678035. C A . . PR;EFF=synonymous_variant(LOW||cTc/cTc|p.Leu154Leu/c.461G>T|911|LOC_Os03g29290|protein_coding|CODING|LOC_Os03g29290.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1089 3 16682908 SNP-3.16681552. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser512Ser/c.1536T>C|859|LOC_Os03g29310|protein_coding|CODING|LOC_Os03g29310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 | |
| 1090 3 16685894 SNP-3.16684538. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1091 3 16685989 SNP-3.16684633. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. | |
| 1092 3 16688049 SNP-3.16686693. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1093 3 16688126 SNP-3.16686770. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1094 3 16692659 SNP-3.16691304. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||395|c.-75C>A|463|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||395|c.-155C>A|449|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1095 3 16694934 SNP-3.16693579. A G . . PR;EFF=intron_variant(MODIFIER|||c.585-112A>G|449|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.2|6|1),intron_variant(MODIFIER|||c.594-79A>G|463|LOC_Os03g29340|protein_coding|CODING|LOC_Os03g29340.1|6|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 | |
| 1096 3 16705256 SNP-3.16703901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1097 3 16705740 SNP-3.16704385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1098 3 16705901 SNP-3.16704546. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 | |
| 1099 3 16708508 SNP-3.16707153. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1100 3 16709942 SNP-3.16708587. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1101 3 16711077 SNP-3.16709722. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 | |
| 1102 3 16711383 SNP-3.16710028. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 | |
| 1103 3 16712609 SNP-3.16711254. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 | |
| 1104 3 16713722 SNP-3.16712367. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 | |
| 1105 3 16713855 SNP-3.16712500. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1106 3 16713877 SNP-3.16712522. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 | |
| 1107 3 16717631 SNP-3.16716276. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1108 3 16718155 SNP-3.16716800. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 1109 3 16719368 SNP-3.16718013. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1110 3 16724730 SNP-3.16723375. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1111 3 16726214 SNP-3.16724859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. | |
| 1112 3 16726980 SNP-3.16725625. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 1113 3 16733773 SNP-3.16732418. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 | |
| 1114 3 16736480 SNP-3.16735125. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 | |
| 1115 3 16737323 SNP-3.16735968. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 | |
| 1116 3 16738150 SNP-3.16736795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 | |
| 1117 3 16738536 SNP-3.16737181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 | |
| 1118 3 16739478 SNP-3.16738123. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1119 3 16740928 SNP-3.16739573. A G . . PR;EFF=intron_variant(MODIFIER|||c.97+52T>C|107|LOC_Os03g29389|protein_coding|CODING|LOC_Os03g29389.1|1|1) GT ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 1120 3 16741152 SNP-3.16739797. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 | |
| 1121 3 16741191 SNP-3.16739836. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 | |
| 1122 3 16742631 SNP-3.16741276. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 | |
| 1123 3 16745344 SNP-3.16743989. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 1124 3 16746102 SNP-3.16744747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 1125 3 16747632 SNP-3.16746277. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1126 3 16749510 SNP-3.16748155. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGc/tTc|p.Cys500Phe/c.1499G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|5|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1127 3 16749956 SNP-3.16748601. C A . . PR;EFF=synonymous_variant(LOW||gcT/gcT|p.Ala351Ala/c.1053G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 1128 3 16753383 SNP-3.16752028. C A . . PR;EFF=intron_variant(MODIFIER|||c.583-20G>T|500|LOC_Os03g29410|protein_coding|CODING|LOC_Os03g29410.1|1|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1129 3 16754512 SNP-3.16753157. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1130 3 16757648 SNP-3.16756293. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1131 3 16760451 SNP-3.16759096. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1132 3 16763096 SNP-3.16761741. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1133 3 16766719 SNP-3.16765364. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 | |
| 1134 3 16775485 SNP-3.16774358. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 1135 3 16777112 SNP-3.16775985. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 | |
| 1136 3 16777397 SNP-3.16776270. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 1137 3 16777506 SNP-3.16776379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1138 3 16777607 SNP-3.16776480. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1139 3 16779274 SNP-3.16778147. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tGt|p.Phe102Cys/c.305A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1140 3 16779316 SNP-3.16778189. A G . . PR;EFF=synonymous_variant(LOW||cGg/cGg|p.Arg116Arg/c.347A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1141 3 16779367 SNP-3.16778240. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tGt|p.Phe133Cys/c.398A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 | |
| 1142 3 16779761 SNP-3.16778634. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His228Gln/c.684A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 | |
| 1143 3 16779862 SNP-3.16778735. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile262Lys/c.785C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1144 3 16780004 SNP-3.16778877. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaG|p.Asn309Lys/c.927A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1145 3 16780112 SNP-3.16778985. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys345Trp/c.1035A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1146 3 16780429 SNP-3.16779302. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro403Arg/c.1208A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 1147 3 16780471 SNP-3.16779344. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aAg|p.Thr417Lys/c.1250C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 | |
| 1148 3 16780558 SNP-3.16779431. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr446Arg/c.1337A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 | |
| 1149 3 16780639 SNP-3.16779512. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met473Arg/c.1418A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1150 3 16780671 SNP-3.16779544. C A . . PR;EFF=synonymous_variant(LOW||Agg/Agg|p.Arg484Arg/c.1450C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1151 3 16780741 SNP-3.16779614. A G . . PR;EFF=synonymous_variant(LOW||tGg/tGg|p.Trp507Trp/c.1520A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. | |
| 1152 3 16780915 SNP-3.16779788. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTa/cAa|p.Leu565Gln/c.1694C>A|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 | |
| 1153 3 16781002 SNP-3.16779875. A G . . PR;EFF=synonymous_variant(LOW||cGg/cGg|p.Arg594Arg/c.1781A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1154 3 16781077 SNP-3.16779950. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aGa|p.Thr619Arg/c.1856A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1155 3 16781257 SNP-3.16780130. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gGa|p.Val679Gly/c.2036A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1156 3 16781605 SNP-3.16780478. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAa/gGa|p.Glu795Gly/c.2384A>G|818|LOC_Os03g29440|protein_coding|CODING|LOC_Os03g29440.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 1157 3 16784936 SNP-3.16783809. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 1158 3 16789370 SNP-3.16788243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 1159 3 16791091 SNP-3.16789964. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 1160 3 16791407 SNP-3.16790280. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1161 3 16793197 SNP-3.16792070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1162 3 16796885 SNP-3.16795758. A G . . PR;EFF=intron_variant(MODIFIER|||c.340-1744A>G|224|LOC_Os03g29470|protein_coding|CODING|LOC_Os03g29470.1|1|1) GT 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1163 3 16798362 SNP-3.16797235. A G . . PR;EFF=intron_variant(MODIFIER|||c.340-267A>G|224|LOC_Os03g29470|protein_coding|CODING|LOC_Os03g29470.1|1|1) GT 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 1164 3 16801060 SNP-3.16799933. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 | |
| 1165 3 16807398 SNP-3.16806271. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1166 3 16807958 SNP-3.16806831. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1167 3 16811339 SNP-3.16810212. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttt/Gtt|p.Phe72Val/c.214A>G|128|LOC_Os03g29490|protein_coding|CODING|LOC_Os03g29490.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1168 3 16817640 SNP-3.16816513. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+273T>C|99|LOC_Os03g29510|protein_coding|CODING|LOC_Os03g29510.1|1|1) GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1169 3 16817724 SNP-3.16816597. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+189T>C|99|LOC_Os03g29510|protein_coding|CODING|LOC_Os03g29510.1|1|1) GT 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 | |
| 1170 3 16818214 SNP-3.16817087. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1171 3 16820497 SNP-3.16819370. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1172 3 16820716 SNP-3.16819589. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1173 3 16820765 SNP-3.16819638. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. | |
| 1174 3 16822183 SNP-3.16821056. C A . . PR;EFF=synonymous_variant(LOW||atT/atT|p.Ile1492Ile/c.4476G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 | |
| 1175 3 16822258 SNP-3.16821131. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|agA/agT|p.Arg1467Ser/c.4401G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1176 3 16822481 SNP-3.16821354. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAc/gCc|p.Asp1393Ala/c.4178T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 1177 3 16822667 SNP-3.16821540. A G . . PR;EFF=intron_variant(MODIFIER|||c.4124-132T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|9|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1178 3 16824914 SNP-3.16823787. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His1152Leu/c.3455G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1179 3 16826960 SNP-3.16825833. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gCt|p.Val673Ala/c.2018T>C|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. | |
| 1180 3 16827601 SNP-3.16826474. C A . . PR;EFF=synonymous_variant(LOW||gaT/gaT|p.Asp509Asp/c.1527G>T|1922|LOC_Os03g29520|protein_coding|CODING|LOC_Os03g29520.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1181 3 16830403 SNP-3.16829276. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 | |
| 1182 3 16833880 SNP-3.16832753. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. | |
| 1183 3 16834732 SNP-3.16833605. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. ./. ./. ./. 0/1 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 | |
| 1184 3 16834840 SNP-3.16833713. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1185 3 16838056 SNP-3.16836929. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||76|c.-76T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-49-27T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.1|1|1),intron_variant(MODIFIER|||c.-49-27T>C|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.3|1|1) GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 | |
| 1186 3 16840375 SNP-3.16839248. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||2395|c.-2395G>T|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.-50+202G>T|305|LOC_Os03g29540|protein_coding|CODING|LOC_Os03g29540.3|1|1) GT ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 1187 3 16841473 SNP-3.16840346. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGt/tCt|p.Cys240Ser/c.719T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 | |
| 1188 3 16841580 SNP-3.16840453. C A . . PR;EFF=intron_variant(MODIFIER|||c.677-65G>T|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|2|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1189 3 16842371 SNP-3.16841244. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly135Arg/c.403T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 | |
| 1190 3 16842419 SNP-3.16841292. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Tta|p.Val119Leu/c.355G>T|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1191 3 16842546 SNP-3.16841419. A G . . PR;EFF=synonymous_variant(LOW||gaC/gaC|p.Asp76Asp/c.228T>C|303|LOC_Os03g29550|protein_coding|CODING|LOC_Os03g29550.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 | |
| 1192 3 16842798 SNP-3.16841671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1193 3 16843300 SNP-3.16842173. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 1194 3 16855971 SNP-3.16854844. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 | |
| 1195 3 16856289 SNP-3.16855162. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1196 3 16856475 SNP-3.16855348. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1197 3 16861320 SNP-3.16860193. C A . . PR;EFF=intron_variant(MODIFIER|||c.184+254G>T|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|3|1) GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1198 3 16861617 SNP-3.16860490. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgC|p.Arg47Arg/c.141T>C|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|3|1) GT 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 | |
| 1199 3 16861796 SNP-3.16860669. C A . . PR;EFF=intron_variant(MODIFIER|||c.76-114G>T|217|LOC_Os03g29570|protein_coding|CODING|LOC_Os03g29570.1|2|1) GT ./. 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 1200 3 16864273 SNP-3.16863146. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu113Leu/c.339A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1201 3 16865191 SNP-3.16864064. A G . . PR;EFF=intron_variant(MODIFIER|||c.717+111A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1202 3 16865836 SNP-3.16864709. C A . . PR;EFF=intron_variant(MODIFIER|||c.718-58C>A|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1203 3 16866568 SNP-3.16865441. A G . . PR;EFF=intron_variant(MODIFIER|||c.846+546A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|3|1) GT 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 | |
| 1204 3 16867052 SNP-3.16865925. A G . . PR;EFF=intron_variant(MODIFIER|||c.847-413A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1205 3 16867616 SNP-3.16866489. A G . . PR;EFF=intron_variant(MODIFIER|||c.915+83A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 | |
| 1206 3 16867809 SNP-3.16866682. A G . . PR;EFF=intron_variant(MODIFIER|||c.915+276A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|4|1) GT 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 | |
| 1207 3 16868418 SNP-3.16867291. A G . . PR;EFF=intron_variant(MODIFIER|||c.1116+49A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|5|1) GT 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1208 3 16868554 SNP-3.16867427. C A . . PR;EFF=intron_variant(MODIFIER|||c.1116+185C>A|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|5|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. | |
| 1209 3 16869013 SNP-3.16867886. A G . . PR;EFF=synonymous_variant(LOW||Gtt/Gtt|p.Val391Val/c.1171A>G|401|LOC_Os03g29584|protein_coding|CODING|LOC_Os03g29584.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1210 3 16869049 SNP-3.16867922. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1211 3 16869162 SNP-3.16868035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1212 3 16869256 SNP-3.16868129. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 | |
| 1213 3 16869645 SNP-3.16868518. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 | |
| 1214 3 16873120 SNP-3.16871993. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1215 3 16873753 SNP-3.16872626. A G . . PR;EFF=synonymous_variant(LOW||gGg/gGg|p.Gly5Gly/c.14A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1216 3 16874793 SNP-3.16873666. C A . . PR;EFF=intron_variant(MODIFIER|||c.844-26C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|3|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 1217 3 16874827 SNP-3.16873700. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccT/ccA|p.Pro284Pro/c.852C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1218 3 16875286 SNP-3.16874159. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu405Leu/c.1215A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1219 3 16876042 SNP-3.16874915. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro526Pro/c.1578A>G|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 ./. 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 | |
| 1220 3 16876766 SNP-3.16875639. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr729Thr/c.2185C>A|798|LOC_Os03g29600|protein_coding|CODING|LOC_Os03g29600.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1221 3 16877583 SNP-3.16876456. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1222 3 16878653 SNP-3.16877526. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1223 3 16879736 SNP-3.16878609. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||54|c.*54G>T|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1224 3 16881068 SNP-3.16879941. C A . . PR;EFF=intron_variant(MODIFIER|||c.264-576G>T|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|2|1) GT 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1225 3 16882354 SNP-3.16881227. A G . . PR;EFF=intron_variant(MODIFIER|||c.263+861T>C|321|LOC_Os03g29614|protein_coding|CODING|LOC_Os03g29614.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 0/0 0/1 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 | |
| 1226 3 16884674 SNP-3.16883547. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 1227 3 16885632 SNP-3.16884505. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1228 3 16887221 SNP-3.16886094. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1229 3 16887442 SNP-3.16886315. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1230 3 16887944 SNP-3.16886817. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1231 3 16894190 SNP-3.16893063. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1232 3 16894727 SNP-3.16893600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1233 3 16901615 SNP-3.16900488. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 | |
| 1234 3 16906662 SNP-3.16905535. A G . . PR;EFF=intron_variant(MODIFIER|||c.2082+215A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|4|1) GT 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 | |
| 1235 3 16907231 SNP-3.16906104. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala742Ala/c.2226C>A|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1236 3 16907925 SNP-3.16906798. A G . . PR;EFF=intron_variant(MODIFIER|||c.2791-60A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|5|1) GT 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 | |
| 1237 3 16908677 SNP-3.16907550. C A . . PR;EFF=synonymous_variant(LOW|SILENT|cgC/cgA|p.Arg1161Arg/c.3483C>A|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|6|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1238 3 16908694 SNP-3.16907567. A G . . PR;EFF=synonymous_variant(LOW||gGa/gGa|p.Gly1167Gly/c.3500A>G|1659|LOC_Os03g29650|protein_coding|CODING|LOC_Os03g29650.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. | |
| 1239 3 16911094 SNP-3.16909967. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu661Leu/c.1983G>T|823|LOC_Os03g29660|protein_coding|CODING|LOC_Os03g29660.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1240 3 16912862 SNP-3.16911735. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcC|p.Ala198Ala/c.594T>C|823|LOC_Os03g29660|protein_coding|CODING|LOC_Os03g29660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 | |
| 1241 3 16913768 SNP-3.16912641. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. | |
| 1242 3 16913889 SNP-3.16912762. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 | |
| 1243 3 16916409 SNP-3.16915282. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1244 3 16918539 SNP-3.16917412. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 | |
| 1245 3 16922757 SNP-3.16921630. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/1 | |
| 1246 3 16922834 SNP-3.16921707. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1247 3 16925079 SNP-3.16923952. A G . . PR;EFF=intron_variant(MODIFIER|||c.336+42T>C|195|LOC_Os03g29690|protein_coding|CODING|LOC_Os03g29690.1|1|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1248 3 16926996 SNP-3.16925869. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1249 3 16928902 SNP-3.16927775. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1250 3 16931092 SNP-3.16929965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1251 3 16931262 SNP-3.16930135. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1252 3 16936518 SNP-3.16935391. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1253 3 16936542 SNP-3.16935415. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1254 3 16936990 SNP-3.16935863. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1255 3 16941790 SNP-3.16940663. A G . . PR;EFF=intron_variant(MODIFIER|||c.58+415A>G|80|LOC_Os03g29740|protein_coding|CODING|LOC_Os03g29740.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1256 3 16944235 SNP-3.16943108. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. | |
| 1257 3 16945031 SNP-3.16943904. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1258 3 16946305 SNP-3.16945178. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1259 3 16946616 SNP-3.16945489. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1260 3 16948390 SNP-3.16947263. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1261 3 16957271 SNP-3.16956144. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1262 3 16958073 SNP-3.16956946. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1263 3 16958180 SNP-3.16957053. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1264 3 16959242 SNP-3.16958115. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1265 3 16964467 SNP-3.16963340. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1266 3 16965256 SNP-3.16964129. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1674|c.-194C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1674|c.-189C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 | |
| 1267 3 16966085 SNP-3.16964958. C A . . PR;EFF=intron_variant(MODIFIER|||c.-42+677C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-37+677C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 1268 3 16966140 SNP-3.16965013. A G . . PR;EFF=intron_variant(MODIFIER|||c.-42+732A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-37+732A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 1269 3 16966275 SNP-3.16965148. A G . . PR;EFF=intron_variant(MODIFIER|||c.-41-614A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|1|1),intron_variant(MODIFIER|||c.-36-619A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|1|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. | |
| 1270 3 16967089 SNP-3.16965962. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu24Leu/c.72C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1271 3 16967136 SNP-3.16966009. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1),missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1),missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp40Gly/c.119A>G|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1) GT ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 | |
| 1272 3 16968739 SNP-3.16967612. C A . . PR;EFF=intron_variant(MODIFIER|||c.218-129C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.1|3|1),intron_variant(MODIFIER|||c.218-129C>A|317|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.2|2|1),intron_variant(MODIFIER|||c.218-144C>A|312|LOC_Os03g29760|protein_coding|CODING|LOC_Os03g29760.3|3|1) GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1273 3 16972073 SNP-3.16970946. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 | |
| 1274 3 16972738 SNP-3.16971611. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 | |
| 1275 3 16975586 SNP-3.16974459. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser9Ser/c.27T>C|158|LOC_Os03g29770|protein_coding|CODING|LOC_Os03g29770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 | |
| 1276 3 16976297 SNP-3.16975170. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 | |
| 1277 3 16976839 SNP-3.16975712. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1278 3 16978308 SNP-3.16977181. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1279 3 16978380 SNP-3.16977253. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 | |
| 1280 3 16991576 SNP-3.16990449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1281 3 16993049 SNP-3.16991922. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1282 3 16993369 SNP-3.16992242. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 | |
| 1283 3 16994927 SNP-3.16993800. A G . . PR;EFF=intron_variant(MODIFIER|||c.104-312A>G|259|LOC_Os03g29810|protein_coding|CODING|LOC_Os03g29810.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1284 3 16998202 SNP-3.16997075. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1285 3 17000857 SNP-3.16999730. A G . . PR;EFF=synonymous_variant(LOW||Gaa/Gaa|p.Glu97Glu/c.289A>G|178|LOC_Os03g29830|protein_coding|CODING|LOC_Os03g29830.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1286 3 17003965 SNP-3.17002838. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 | |
| 1287 3 17006312 SNP-3.17005185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1288 3 17006838 SNP-3.17005711. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. | |
| 1289 3 17006865 SNP-3.17005738. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1290 3 17006874 SNP-3.17005747. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1291 3 17011979 SNP-3.17010852. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 | |
| 1292 3 17012377 SNP-3.17011250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1293 3 17013438 SNP-3.17012311. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1294 3 17013512 SNP-3.17012385. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1295 3 17013703 SNP-3.17012576. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 | |
| 1296 3 17015006 SNP-3.17013879. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gat/Cat|p.Asp1295His/c.3883T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 | |
| 1297 3 17019074 SNP-3.17017947. A G . . PR;EFF=intron_variant(MODIFIER|||c.1337-97T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|4|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1298 3 17019476 SNP-3.17018349. A G . . PR;EFF=intron_variant(MODIFIER|||c.1336+211T>C|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|4|1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1299 3 17020461 SNP-3.17019334. C A . . PR;EFF=intron_variant(MODIFIER|||c.1231+37G>T|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1300 3 17022129 SNP-3.17021002. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaA/gaT|p.Glu148Asp/c.444G>T|1481|LOC_Os03g29864|protein_coding|CODING|LOC_Os03g29864.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1301 3 17023931 SNP-3.17022804. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/1 1/1 ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 0/1 | |
| 1302 3 17027034 SNP-3.17025907. A G . . PR;EFF=synonymous_variant(LOW||cCg/cCg|p.Pro477Pro/c.1430T>C|962|LOC_Os03g29880|protein_coding|CODING|LOC_Os03g29880.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. | |
| 1303 3 17032121 SNP-3.17030994. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly597Arg/c.1789T>C|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. | |
| 1304 3 17032918 SNP-3.17031791. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cTt|p.Arg331Leu/c.992G>T|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|4|1) GT ./. 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1305 3 17034429 SNP-3.17033302. A G . . PR;EFF=intron_variant(MODIFIER|||c.207+280T>C|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|2|1) GT 1/1 0/1 ./. 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1306 3 17035092 SNP-3.17033965. C A . . PR;EFF=intron_variant(MODIFIER|||c.98+37G>T|664|LOC_Os03g29900|protein_coding|CODING|LOC_Os03g29900.1|1|1) GT 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1307 3 17035251 SNP-3.17034124. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 1308 3 17035826 SNP-3.17034699. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1309 3 17035928 SNP-3.17034801. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1310 3 17036502 SNP-3.17035375. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1311 3 17036731 SNP-3.17035604. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 ./. 0/1 0/0 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 ./. ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1312 3 17037461 SNP-3.17036334. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1313 3 17039258 SNP-3.17038131. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1314 3 17041239 SNP-3.17040112. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1650|c.-1650C>A|119|LOC_Os03g29910|protein_coding|CODING|LOC_Os03g29910.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.64+1601C>A|131|LOC_Os03g29910|protein_coding|CODING|LOC_Os03g29910.1|1|1) GT 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1315 3 17046414 SNP-3.17045287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. | |
| 1316 3 17056800 SNP-3.17055613ct. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 1317 3 17057151 SNP-3.17055964. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1318 3 17057230 SNP-3.17056043. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 1319 3 17059410 SNP-3.17058223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1320 3 17061585 SNP-3.17060398. A G . . PR;EFF=splice_region_variant(LOW|||c.173A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|1|1),intron_variant(MODIFIER|||c.173-3A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|1|1) GT 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 | |
| 1321 3 17062268 SNP-3.17061081. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu264Met/c.790C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1322 3 17064370 SNP-3.17063183. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys733Lys/c.2197C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1323 3 17064446 SNP-3.17063259. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His758His/c.2273C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1324 3 17064447 SNP-3.17063260. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caT/caA|p.His758Gln/c.2274C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1325 3 17064676 SNP-3.17063489. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctt/Att|p.Leu835Ile/c.2503C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1326 3 17064954 SNP-3.17063767. C A . . PR;EFF=intron_variant(MODIFIER|||c.2577+204C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|8|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1327 3 17065946 SNP-3.17064759. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn995Lys/c.2985C>A|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|11|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 | |
| 1328 3 17066399 SNP-3.17065212. A G . . PR;EFF=intron_variant(MODIFIER|||c.3362-21A>G|1211|LOC_Os03g29940|protein_coding|CODING|LOC_Os03g29940.1|11|1) GT 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1329 3 17067493 SNP-3.17066306. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1330 3 17069149 SNP-3.17067962. C A . . PR;EFF=intron_variant(MODIFIER|||c.555+155C>A|577|LOC_Os03g29950|protein_coding|CODING|LOC_Os03g29950.1|4|1),intron_variant(MODIFIER|||c.177+155C>A|451|LOC_Os03g29950|protein_coding|CODING|LOC_Os03g29950.2|4|1) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1331 3 17073834 SNP-3.17072647. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 1332 3 17074874 SNP-3.17073687. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1333 3 17076813 SNP-3.17075626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1334 3 17079019 SNP-3.17077832. A G . . PR;EFF=intron_variant(MODIFIER|||c.100-9A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1335 3 17080712 SNP-3.17079525. A G . . PR;EFF=synonymous_variant(LOW||atG/atG|p.Met208Met/c.624A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1336 3 17080998 SNP-3.17079811. A G . . PR;EFF=synonymous_variant(LOW||Gtt/Gtt|p.Val304Val/c.910A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/1 | |
| 1337 3 17082728 SNP-3.17081541. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taG|p.Tyr342*/c.1026A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g29960|LOC_Os03g29960|1|1.00);NMD=(LOC_Os03g29960|LOC_Os03g29960|1|1.00) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1338 3 17083355 SNP-3.17082168. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gGg|p.Ala450Gly/c.1349A>G|677|LOC_Os03g29960|protein_coding|CODING|LOC_Os03g29960.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1339 3 17084496 SNP-3.17083309. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 | |
| 1340 3 17084825 SNP-3.17083638. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1341 3 17085178 SNP-3.17083991. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1342 3 17086489 SNP-3.17085302. C A . . PR;EFF=intron_variant(MODIFIER|||c.637+465C>A|225|LOC_Os03g29970|protein_coding|CODING|LOC_Os03g29970.1|1|1) GT 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1343 3 17086506 SNP-3.17085319. A G . . PR;EFF=intron_variant(MODIFIER|||c.637+482A>G|225|LOC_Os03g29970|protein_coding|CODING|LOC_Os03g29970.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 1344 3 17089448 SNP-3.17088261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/1 | |
| 1345 3 17089753 SNP-3.17088566. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1346 3 17090397 SNP-3.17089210. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 | |
| 1347 3 17090472 SNP-3.17089285. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1348 3 17090776 SNP-3.17089589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1349 3 17092256 SNP-3.17091069. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1130|c.-310A>G|374|LOC_Os03g29980|protein_coding|CODING|LOC_Os03g29980.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 1350 3 17092943 SNP-3.17091756. A G . . PR;EFF=intron_variant(MODIFIER|||c.-221+9A>G|374|LOC_Os03g29980|protein_coding|CODING|LOC_Os03g29980.2|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1351 3 17097439 SNP-3.17096252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 | |
| 1352 3 17098846 SNP-3.17097659. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1353 3 17099351 SNP-3.17098164. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1354 3 17099628 SNP-3.17098441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1355 3 17100185 SNP-3.17098998. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. | |
| 1356 3 17100860 SNP-3.17099673. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1357 3 17101619 SNP-3.17100432. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1358 3 17102747 SNP-3.17101560. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1359 3 17103110 SNP-3.17101923. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 ./. 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. ./. 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 | |
| 1360 3 17106949 SNP-3.17105762. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1361 3 17107044 SNP-3.17105857. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1362 3 17107091 SNP-3.17105904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1363 3 17107615 SNP-3.17106428. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1364 3 17113483 SNP-3.17112296. A G . . PR;EFF=intron_variant(MODIFIER|||c.-2-23T>C|541|LOC_Os03g30000|protein_coding|CODING|LOC_Os03g30000.1|1|1) GT ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. | |
| 1365 3 17114176 SNP-3.17112989. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1366 3 17114400 SNP-3.17113213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1367 3 17116915 SNP-3.17115728. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1368 3 17117693 SNP-3.17116506. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/1 | |
| 1369 3 17118886 SNP-3.17117699. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1370 3 17120131 SNP-3.17118944. A G . . PR;EFF=intron_variant(MODIFIER|||c.87+389T>C|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|2|1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1371 3 17120266 SNP-3.17119079. A G . . PR;EFF=intron_variant(MODIFIER|||c.87+254T>C|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1372 3 17120722 SNP-3.17119535. C A . . PR;EFF=intron_variant(MODIFIER|||c.34-149G>T|113|LOC_Os03g30010|protein_coding|CODING|LOC_Os03g30010.1|1|1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1373 3 17123162 SNP-3.17121975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 | |
| 1374 3 17123460 SNP-3.17122273. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 1375 3 17123994 SNP-3.17122807. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1376 3 17126152 SNP-3.17124965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1377 3 17126775 SNP-3.17125588. A G . . PR;EFF=intron_variant(MODIFIER|||c.177+173A>G|65|LOC_Os03g30020|protein_coding|CODING|LOC_Os03g30020.1|1|1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1378 3 17127527 SNP-3.17126340. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1379 3 17128413 SNP-3.17127226. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/1 | |
| 1380 3 17129150 SNP-3.17127963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1381 3 17129302 SNP-3.17128115. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1382 3 17130280 SNP-3.17129093. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1383 3 17131818 SNP-3.17130631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 | |
| 1384 3 17131858 SNP-3.17130671. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1385 3 17132905 SNP-3.17131718. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1386 3 17133832 SNP-3.17132645. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1387 3 17134497 SNP-3.17133310. A G . . PR;EFF=synonymous_variant(LOW||gCt/gCt|p.Ala464Ala/c.1391T>C|504|LOC_Os03g30030|protein_coding|CODING|LOC_Os03g30030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1388 3 17137062 SNP-3.17135875. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 | |
| 1389 3 17138730 SNP-3.17137543. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 | |
| 1390 3 17140286 SNP-3.17139099. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1391 3 17140784 SNP-3.17139597. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 1392 3 17143836 SNP-3.17142649. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAc/aTc|p.Asn155Ile/c.464G>T|361|LOC_Os03g30060|protein_coding|CODING|LOC_Os03g30060.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1393 3 17158273 SNP-3.17157082. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1394 3 17162405 SNP-3.17161214. C A . . PR;EFF=intron_variant(MODIFIER|||c.307-167G>T|193|LOC_Os03g30088|protein_coding|CODING|LOC_Os03g30088.1|2|1) GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1395 3 17162768 SNP-3.17161577. C A . . PR;EFF=synonymous_variant(LOW||Ttg/Ttg|p.Leu63Leu/c.187G>T|193|LOC_Os03g30088|protein_coding|CODING|LOC_Os03g30088.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 | |
| 1396 3 17165364 SNP-3.17164173. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1397 3 17167703 SNP-3.17166512. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 | |
| 1398 3 17168660 SNP-3.17167469. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1399 3 17170058 SNP-3.17168867. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 | |
| 1400 3 17171398 SNP-3.17170207. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1401 3 17175832 SNP-3.17174641. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1402 3 17177886 SNP-3.17176695. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1403 3 17177922 SNP-3.17176731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1404 3 17178542 SNP-3.17177351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1405 3 17180744 SNP-3.17179553. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met447Arg/c.1340A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 | |
| 1406 3 17180764 SNP-3.17179573. A G . . PR;EFF=synonymous_variant(LOW||Gag/Gag|p.Glu454Glu/c.1360A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1407 3 17180994 SNP-3.17179803. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu530Leu/c.1590A>G|621|LOC_Os03g30100|protein_coding|CODING|LOC_Os03g30100.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 | |
| 1408 3 17185798 SNP-3.17184607. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr539Ser/c.1615G>T|1727|LOC_Os03g30110|protein_coding|CODING|LOC_Os03g30110.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 | |
| 1409 3 17188092 SNP-3.17186901. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gTg|p.Gly59Val/c.176G>T|1727|LOC_Os03g30110|protein_coding|CODING|LOC_Os03g30110.1|1|1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1410 3 17190109 SNP-3.17188918. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1411 3 17190292 SNP-3.17189101. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 | |
| 1412 3 17194160 SNP-3.17192969. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1413 3 17194174 SNP-3.17192983. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 | |
| 1414 3 17197639 SNP-3.17196448. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys62Lys/c.184C>A|263|LOC_Os03g30120|protein_coding|CODING|LOC_Os03g30120.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1415 3 17198765 SNP-3.17197574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1416 3 17199644 SNP-3.17198453. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1417 3 17199966 SNP-3.17198775. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1418 3 17201134 SNP-3.17199943. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1419 3 17202901 SNP-3.17201710. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1420 3 17204094 SNP-3.17202903. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1421 3 17206153 SNP-3.17204962. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1422 3 17206800 SNP-3.17205609. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 | |
| 1423 3 17210461 SNP-3.17209270. C A . . PR;EFF=intron_variant(MODIFIER|||c.-36-41G>T|360|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.1|1|1),intron_variant(MODIFIER|||c.-36-41G>T|360|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.2|1|1),intron_variant(MODIFIER|||c.-36-41G>T|377|LOC_Os03g30130|protein_coding|CODING|LOC_Os03g30130.3|1|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1424 3 17210715 SNP-3.17209524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1425 3 17211215 SNP-3.17210024. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1426 3 17211277 SNP-3.17210086. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 | |
| 1427 3 17211985 SNP-3.17210794. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 1428 3 17213124 SNP-3.17211933. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 | |
| 1429 3 17213678 SNP-3.17212487. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aTt|p.Thr228Ile/c.683G>T|277|LOC_Os03g30150|protein_coding|CODING|LOC_Os03g30150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.683G>T|277|LOC_Os03g30150|protein_coding|CODING|LOC_Os03g30150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1430 3 17217646 SNP-3.17216455. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 | |
| 1431 3 17221550 SNP-3.17220359. C A . . PR;EFF=synonymous_variant(LOW||atA/atA|p.Ile657Ile/c.1971C>A|828|LOC_Os03g30170|protein_coding|CODING|LOC_Os03g30170.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 | |
| 1432 3 17228574 SNP-3.17227383. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 | |
| 1433 3 17229925 SNP-3.17228734. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 | |
| 1434 3 17236363 SNP-3.17235172. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1435 3 17236799 SNP-3.17235608. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala37Ala/c.111A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcG/gcG|p.Ala37Ala/c.111A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 | |
| 1436 3 17240709 SNP-3.17239518. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3400|c.*75A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||60|c.*60A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 | |
| 1437 3 17240878 SNP-3.17239687. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3569|c.*244A>G|206|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||229|c.*229A>G|208|LOC_Os03g30200|protein_coding|CODING|LOC_Os03g30200.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 | |
| 1438 3 17248594 SNP-3.17247403. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTc/cAc|p.Leu93His/c.278C>A|335|LOC_Os03g30220|protein_coding|CODING|LOC_Os03g30220.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1439 3 17251999 SNP-3.17250808. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1440 3 17253025 SNP-3.17251834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1441 3 17254178 SNP-3.17252987. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1442 3 17255297 SNP-3.17254106. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 | |
| 1443 3 17257252 SNP-3.17256061. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1444 3 17257501 SNP-3.17256310. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 | |
| 1445 3 17257967 SNP-3.17256776. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. | |
| 1446 3 17260017 SNP-3.17258826. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1447 3 17260323 SNP-3.17259132. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||178|c.-178A>G|468|LOC_Os03g30250|protein_coding|CODING|LOC_Os03g30250.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1448 3 17261757 SNP-3.17260566. A G . . PR;EFF=intron_variant(MODIFIER|||c.1120+43A>G|468|LOC_Os03g30250|protein_coding|CODING|LOC_Os03g30250.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1449 3 17264492 SNP-3.17263301. A G . . PR;EFF=intron_variant(MODIFIER|||c.162+101T>C|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|2|1) GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1450 3 17265206 SNP-3.17264015. C A . . PR;EFF=intron_variant(MODIFIER|||c.83-534G>T|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|1|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1451 3 17266180 SNP-3.17264989. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||162|c.-162G>T|458|LOC_Os03g30260|protein_coding|CODING|LOC_Os03g30260.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1452 3 17266653 SNP-3.17265462. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1453 3 17267380 SNP-3.17266189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1454 3 17268078 SNP-3.17266887. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1455 3 17270402 SNP-3.17269211. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1456 3 17272125 SNP-3.17270934. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 1457 3 17273290 SNP-3.17272099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1458 3 17273462 SNP-3.17272271. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1459 3 17275994 SNP-3.17274803. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||7|c.-7C>A|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. | |
| 1460 3 17276108 SNP-3.17274917. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro36Pro/c.108A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 | |
| 1461 3 17276840 SNP-3.17275649. A G . . PR;EFF=intron_variant(MODIFIER|||c.375-233A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|1|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1462 3 17277250 SNP-3.17276059. A G . . PR;EFF=intron_variant(MODIFIER|||c.480+72A>G|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|2|1) GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1463 3 17278027 SNP-3.17276836. C A . . PR;EFF=synonymous_variant(LOW||aAc/aAc|p.Asn247Asn/c.740C>A|254|LOC_Os03g30270|protein_coding|CODING|LOC_Os03g30270.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1464 3 17278691 SNP-3.17277500. A G . . PR;EFF=synonymous_variant(LOW||Cag/Cag|p.Gln144Gln/c.430T>C|171|LOC_Os03g30280|protein_coding|CODING|LOC_Os03g30280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1465 3 17278757 SNP-3.17277566. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Cgt|p.Gly122Arg/c.364T>C|171|LOC_Os03g30280|protein_coding|CODING|LOC_Os03g30280.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1466 3 17279274 SNP-3.17278083. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1467 3 17282773 SNP-3.17281582. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 | |
| 1468 3 17285432 SNP-3.17284241. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1469 3 17287490 SNP-3.17286299. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 | |
| 1470 3 17294126 SNP-3.17292935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1471 3 17295161 SNP-3.17293970. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1472 3 17295666 SNP-3.17294475. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1473 3 17295669 SNP-3.17294478. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. | |
| 1474 3 17297158 SNP-3.17295967. C A . . PR;EFF=intron_variant(MODIFIER|||c.126+81C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1475 3 17299097 SNP-3.17297906. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gAg|p.Gly127Glu/c.380C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1476 3 17299249 SNP-3.17298058. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys165Lys/c.493C>A|237|LOC_Os03g30320|protein_coding|CODING|LOC_Os03g30320.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1477 3 17301282 SNP-3.17300091. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 1478 3 17301393 SNP-3.17300202. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1479 3 17302249 SNP-3.17301058. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1480 3 17302840 SNP-3.17301649. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1481 3 17302866 SNP-3.17301675. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1482 3 17307301 SNP-3.17306110. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1483 3 17308836 SNP-3.17307645. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1484 3 17309669 SNP-3.17308478. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gGt|p.Asp204Gly/c.611A>G|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1485 3 17309756 SNP-3.17308565. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGg/gAg|p.Gly233Glu/c.698C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1486 3 17310245 SNP-3.17309054. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser374Thr/c.1120C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 | |
| 1487 3 17310890 SNP-3.17309699. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly494Glu/c.1481C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1488 3 17311820 SNP-3.17310629. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu789Leu/c.2367C>A|999|LOC_Os03g30350|protein_coding|CODING|LOC_Os03g30350.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1489 3 17312803 SNP-3.17311612. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val34Glu/c.101C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1490 3 17313282 SNP-3.17312091. A G . . PR;EFF=intron_variant(MODIFIER|||c.525+55A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|1|1) GT 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/1 ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1491 3 17315125 SNP-3.17313934. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu345Leu/c.1035A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 | |
| 1492 3 17316053 SNP-3.17314862. C A . . PR;EFF=intron_variant(MODIFIER|||c.1305-208C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 | |
| 1493 3 17316246 SNP-3.17315055. C A . . PR;EFF=intron_variant(MODIFIER|||c.1305-15C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|4|1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1494 3 17316358 SNP-3.17315167. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg468Gly/c.1402A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1495 3 17316524 SNP-3.17315333. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cGa|p.Pro523Arg/c.1568A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1496 3 17316583 SNP-3.17315392. A G . . PR;EFF=synonymous_variant(LOW||Ggg/Ggg|p.Gly543Gly/c.1627A>G|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 | |
| 1497 3 17316704 SNP-3.17315513. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val583Glu/c.1748C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1498 3 17316770 SNP-3.17315579. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tCa/tAa|p.Ser605*/c.1814C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1) GT ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 | |
| 1499 3 17316808 SNP-3.17315617. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Act|p.Ala618Thr/c.1852C>A|627|LOC_Os03g30360|protein_coding|CODING|LOC_Os03g30360.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 1/1 ./. | |
| 1500 3 17317090 SNP-3.17315899. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1501 3 17317120 SNP-3.17315929. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1502 3 17317156 SNP-3.17315965. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1503 3 17317611 SNP-3.17316420. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. | |
| 1504 3 17323813 SNP-3.17322622. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 | |
| 1505 3 17328763 SNP-3.17327572. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1506 3 17329992 SNP-3.17328801. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1507 3 17331753 SNP-3.17330562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1508 3 17332696 SNP-3.17331505. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1509 3 17334445 SNP-3.17333254. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1510 3 17337378 SNP-3.17336187. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1511 3 17340602 SNP-3.17339411. A G . . PR;EFF=stop_lost(HIGH|MISSENSE|tgA/tgC|p.Ter516Cysext*?/c.1548T>C|515|LOC_Os03g30420|protein_coding|CODING|LOC_Os03g30420.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 | |
| 1512 3 17342404 SNP-3.17341213. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1513 3 17343763 SNP-3.17342572. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1514 3 17344512 SNP-3.17343321. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1515 3 17349057 SNP-3.17347866. C A . . PR;EFF=intron_variant(MODIFIER|||c.-22-422G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-22-422G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1516 3 17349725 SNP-3.17348534. C A . . PR;EFF=intron_variant(MODIFIER|||c.-23+698G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-23+703G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1517 3 17350375 SNP-3.17349184. C A . . PR;EFF=intron_variant(MODIFIER|||c.-23+48G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.2|1|1),intron_variant(MODIFIER|||c.-23+53G>T|116|LOC_Os03g30430|protein_coding|CODING|LOC_Os03g30430.1|1|1) GT 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1518 3 17351193 SNP-3.17350002. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1519 3 17354614 SNP-3.17353423. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. | |
| 1520 3 17356355 SNP-3.17355164. A G . . PR;EFF=intron_variant(MODIFIER|||c.280-150T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|4|1) GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1521 3 17357038 SNP-3.17355847. A G . . PR;EFF=intron_variant(MODIFIER|||c.194-22T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 1522 3 17357239 SNP-3.17356048. A G . . PR;EFF=intron_variant(MODIFIER|||c.194-223T>C|173|LOC_Os03g30440|protein_coding|CODING|LOC_Os03g30440.1|3|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 | |
| 1523 3 17360156 SNP-3.17358965. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 | |
| 1524 3 17360361 SNP-3.17359170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1525 3 17361360 SNP-3.17360169. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 | |
| 1526 3 17363340 SNP-3.17362149. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 1527 3 17363396 SNP-3.17362205. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1528 3 17363628 SNP-3.17362437. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 | |
| 1529 3 17368872 SNP-3.17367681. A G . . PR;EFF=intron_variant(MODIFIER|||c.1423+687T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|3|1) GT 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1530 3 17370258 SNP-3.17369067. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg242Trp/c.724G>T|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1531 3 17371659 SNP-3.17370468. C A . . PR;EFF=synonymous_variant(LOW||gTg/gTg|p.Val82Val/c.245G>T|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1532 3 17371724 SNP-3.17370533. A G . . PR;EFF=intron_variant(MODIFIER|||c.199-19T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|1|1) GT ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1533 3 17371751 SNP-3.17370560. A G . . PR;EFF=intron_variant(MODIFIER|||c.199-46T>C|1543|LOC_Os03g30450|protein_coding|CODING|LOC_Os03g30450.1|1|1) GT 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 1534 3 17373470 SNP-3.17372279. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. | |
| 1535 3 17376074 SNP-3.17374883. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1536 3 17376185 SNP-3.17374994. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 | |
| 1537 3 17376429 SNP-3.17375238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 | |
| 1538 3 17381846 SNP-3.17380655. C A . . PR;EFF=intron_variant(MODIFIER|||c.765-145G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|8|1) GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1539 3 17383050 SNP-3.17381859. A G . . PR;EFF=intron_variant(MODIFIER|||c.672+283T>C|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|7|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1540 3 17383188 SNP-3.17381997. C A . . PR;EFF=intron_variant(MODIFIER|||c.672+145G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|7|1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1541 3 17384655 SNP-3.17383464. C A . . PR;EFF=intron_variant(MODIFIER|||c.448-339G>T|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|5|1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1542 3 17386362 SNP-3.17385171. A G . . PR;EFF=intron_variant(MODIFIER|||c.165+57T>C|702|LOC_Os03g30460|protein_coding|CODING|LOC_Os03g30460.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1543 3 17390430 SNP-3.17389239. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1544 3 17391793 SNP-3.17390602. C A . . PR;EFF=synonymous_variant(LOW||gAc/gAc|p.Asp313Asp/c.938C>A|326|LOC_Os03g30470|protein_coding|CODING|LOC_Os03g30470.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1545 3 17393979 SNP-3.17392788. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1546 3 17394776 SNP-3.17393585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1547 3 17397474 SNP-3.17396283. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1548 3 17399578 SNP-3.17398387. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 | |
| 1549 3 17404250 SNP-3.17403059. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala138Ala/c.414A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 | |
| 1550 3 17404496 SNP-3.17403305. A G . . PR;EFF=synonymous_variant(LOW||cgG/cgG|p.Arg220Arg/c.660A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/1 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 | |
| 1551 3 17404634 SNP-3.17403443. A G . . PR;EFF=synonymous_variant(LOW||aaG/aaG|p.Lys266Lys/c.798A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1552 3 17404769 SNP-3.17403578. A G . . PR;EFF=synonymous_variant(LOW||aaG/aaG|p.Lys311Lys/c.933A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1553 3 17405633 SNP-3.17404442. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTa/cAa|p.Leu378Gln/c.1133C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1554 3 17407227 SNP-3.17406036. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctc/Atc|p.Leu480Ile/c.1438C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|6|1) GT 0/0 ./. 0/1 1/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 | |
| 1555 3 17407646 SNP-3.17406455. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gaG/gaA|p.Glu523Glu/c.1569C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1556 3 17407766 SNP-3.17406575. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr563Thr/c.1689C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1557 3 17407784 SNP-3.17406593. C A . . PR;EFF=synonymous_variant(LOW|SILENT|cgT/cgA|p.Arg569Arg/c.1707C>A|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1558 3 17408862 SNP-3.17407671. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Gat|p.His795Asp/c.2383A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1559 3 17408911 SNP-3.17407720. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr811Arg/c.2432A>G|813|LOC_Os03g30510|protein_coding|CODING|LOC_Os03g30510.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1560 3 17410405 SNP-3.17409214. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||1822|c.*1822T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|2|1),intron_variant(MODIFIER|||c.*824-119T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|2|1) GT 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 1561 3 17411943 SNP-3.17410752. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||284|c.*284T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||284|c.*284T>C|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 | |
| 1562 3 17412479 SNP-3.17411288. C A . . PR;EFF=splice_region_variant(LOW|||c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcT/gcT|p.Ala150Ala/c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gcT/gcT|p.Ala150Ala/c.450G>T|158|LOC_Os03g30519|protein_coding|CODING|LOC_Os03g30519.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 | |
| 1563 3 17415865 SNP-3.17414646. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1564 3 17419157 SNP-3.17417938. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. | |
| 1565 3 17421689 SNP-3.17420470. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1566 3 17421863 SNP-3.17420644. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1567 3 17425033 SNP-3.17423814. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val604Ile/c.1810C>A|926|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val603Ile/c.1807C>A|925|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val603Ile/c.1807C>A|652|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.3|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1568 3 17425659 SNP-3.17424440. C A . . PR;EFF=intron_variant(MODIFIER|||c.2030-197C>A|926|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.1|4|1),intron_variant(MODIFIER|||c.2027-197C>A|925|LOC_Os03g30530|protein_coding|CODING|LOC_Os03g30530.2|4|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1569 3 17426889 SNP-3.17425670. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1570 3 17428070 SNP-3.17426851. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1571 3 17428506 SNP-3.17427287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1572 3 17430551 SNP-3.17429332. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1573 3 17431115 SNP-3.17429896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1574 3 17432522 SNP-3.17431303. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 | |
| 1575 3 17433999 SNP-3.17432780. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1576 3 17435638 SNP-3.17434419. C A . . PR;EFF=intron_variant(MODIFIER|||c.-2-123C>A|488|LOC_Os03g30550|protein_coding|CODING|LOC_Os03g30550.1|1|1) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1577 3 17436950 SNP-3.17435731. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser268Ser/c.804C>A|488|LOC_Os03g30550|protein_coding|CODING|LOC_Os03g30550.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1578 3 17439104 SNP-3.17437885. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1579 3 17442289 SNP-3.17441070. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1580 3 17443632 SNP-3.17442413. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1581 3 17447735 SNP-3.17446516. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1582 3 17448662 SNP-3.17447443. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1583 3 17450790 SNP-3.17449571. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.500C>A|234|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.2|2|1),intron_variant(MODIFIER|||c.500-1C>A|234|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.2|1|1),intron_variant(MODIFIER|||c.499+536C>A|307|LOC_Os03g30570|protein_coding|CODING|LOC_Os03g30570.1|1|1);LOF=(LOC_Os03g30570|LOC_Os03g30570|2|0.50) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1584 3 17455247 SNP-3.17454028. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtG/gtC|p.Val6Val/c.18T>C|108|LOC_Os03g30580|protein_coding|CODING|LOC_Os03g30580.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1585 3 17456410 SNP-3.17455191. A G . . PR;EFF=intron_variant(MODIFIER|||c.-19+154T>C|108|LOC_Os03g30580|protein_coding|CODING|LOC_Os03g30580.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1586 3 17457271 SNP-3.17456052. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1587 3 17461457 SNP-3.17460238. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agC/agG|p.Ser54Arg/c.162A>G|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. | |
| 1588 3 17461629 SNP-3.17460410. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu112Met/c.334C>A|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1589 3 17461871 SNP-3.17460652. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala192Ala/c.576C>A|239|LOC_Os03g30600|protein_coding|CODING|LOC_Os03g30600.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 0/0 | |
| 1590 3 17462093 SNP-3.17460874. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1591 3 17462213 SNP-3.17460994. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1592 3 17462855 SNP-3.17461636. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1593 3 17464258 SNP-3.17463039. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1594 3 17465300 SNP-3.17464081. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1595 3 17466511 SNP-3.17465292. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcT|p.Ser260Ser/c.780G>T|314|LOC_Os03g30620|protein_coding|CODING|LOC_Os03g30620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1596 3 17466634 SNP-3.17465415. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaG/aaT|p.Lys219Asn/c.657G>T|314|LOC_Os03g30620|protein_coding|CODING|LOC_Os03g30620.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 | |
| 1597 3 17467370 SNP-3.17466151. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. | |
| 1598 3 17467718 SNP-3.17466499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1599 3 17467753 SNP-3.17466534. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1600 3 17468835 SNP-3.17467616. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1601 3 17474014 SNP-3.17472795. C A . . PR;EFF=intron_variant(MODIFIER|||c.548+325G>T|199|LOC_Os03g30650|protein_coding|CODING|LOC_Os03g30650.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1602 3 17476491 SNP-3.17475272. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1603 3 17480016 SNP-3.17478797. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 | |
| 1604 3 17488862 SNP-3.17487643. A G . . PR;EFF=intron_variant(MODIFIER|||c.56-494A>G|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|1|1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 | |
| 1605 3 17489382 SNP-3.17488163. C A . . PR;EFF=synonymous_variant(LOW||Acc/Acc|p.Thr28Thr/c.82C>A|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1606 3 17489992 SNP-3.17488773. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aGg|p.Met231Arg/c.692A>G|409|LOC_Os03g30700|protein_coding|CODING|LOC_Os03g30700.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 1607 3 17493182 SNP-3.17491963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 | |
| 1608 3 17493629 SNP-3.17492410. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1609 3 17493657 SNP-3.17492438. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1610 3 17506280 SNP-3.17505061. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1611 3 17506439 SNP-3.17505220. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1612 3 17506741 SNP-3.17505522. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/1 0/0 1/1 | |
| 1613 3 17507104 SNP-3.17505885. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 | |
| 1614 3 17508035 SNP-3.17506816. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1615 3 17508310 SNP-3.17507091. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gGt|p.Ala7Gly/c.20A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1616 3 17508325 SNP-3.17507106. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cAc|p.Arg12His/c.35C>A|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 | |
| 1617 3 17509187 SNP-3.17507968. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu263Leu/c.789C>A|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1618 3 17509214 SNP-3.17507995. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caG|p.His272Gln/c.816A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 | |
| 1619 3 17509298 SNP-3.17508079. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp300Glu/c.900A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1620 3 17509481 SNP-3.17508262. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tgC/tgG|p.Cys361Trp/c.1083A>G|361|LOC_Os03g30720|protein_coding|CODING|LOC_Os03g30720.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1621 3 17511061 SNP-3.17509842. C A . . PR;EFF=intron_variant(MODIFIER|||c.280-39C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1622 3 17511335 SNP-3.17510116. C A . . PR;EFF=intron_variant(MODIFIER|||c.395+120C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|3|1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 1623 3 17511446 SNP-3.17510227. C A . . PR;EFF=intron_variant(MODIFIER|||c.396-30C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|3|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1624 3 17511694 SNP-3.17510475. C A . . PR;EFF=intron_variant(MODIFIER|||c.545+69C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|4|1) GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 | |
| 1625 3 17512310 SNP-3.17511091. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys232Lys/c.696C>A|259|LOC_Os03g30730|protein_coding|CODING|LOC_Os03g30730.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1626 3 17512568 SNP-3.17511349. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1627 3 17519704 SNP-3.17518485. A G . . PR;EFF=splice_region_variant(LOW|||c.599T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|4|1),intron_variant(MODIFIER|||c.598+7T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1628 3 17520597 SNP-3.17519378. A G . . PR;EFF=intron_variant(MODIFIER|||c.125+39T>C|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|2|1) GT 0/0 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 1629 3 17520692 SNP-3.17519473. C A . . PR;EFF=synonymous_variant(LOW|SILENT|agC/agT|p.Ser23Ser/c.69G>T|436|LOC_Os03g30740|protein_coding|CODING|LOC_Os03g30740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 | |
| 1630 3 17522136 SNP-3.17520917. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCa/cAa|p.Pro72Gln/c.215C>A|92|LOC_Os03g30744|protein_coding|CODING|LOC_Os03g30744.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1631 3 17523387 SNP-3.17522168. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1632 3 17524099 SNP-3.17522880. A G . . PR;EFF=intron_variant(MODIFIER|||c.148-220T>C|88|LOC_Os03g30750|protein_coding|CODING|LOC_Os03g30750.1|2|1) GT 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1633 3 17524982 SNP-3.17523763. C A . . PR;EFF=intron_variant(MODIFIER|||c.147+516G>T|88|LOC_Os03g30750|protein_coding|CODING|LOC_Os03g30750.1|2|1) GT 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1634 3 17527062 SNP-3.17525843. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1635 3 17527717 SNP-3.17526498. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 | |
| 1636 3 17528096 SNP-3.17526877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1637 3 17529059 SNP-3.17527840. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 | |
| 1638 3 17532885 SNP-3.17531666. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1639 3 17533563 SNP-3.17532344. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/1 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 | |
| 1640 3 17534470 SNP-3.17533251. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1641 3 17535552 SNP-3.17534333. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAt/gCt|p.Asp225Ala/c.674T>C|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1642 3 17535974 SNP-3.17534755. C A . . PR;EFF=synonymous_variant(LOW||ccT/ccT|p.Pro84Pro/c.252G>T|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1643 3 17537337 SNP-3.17536118. A G . . PR;EFF=intron_variant(MODIFIER|||c.24+617T>C|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1644 3 17537864 SNP-3.17536645. C A . . PR;EFF=intron_variant(MODIFIER|||c.24+90G>T|352|LOC_Os03g30760|protein_coding|CODING|LOC_Os03g30760.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1645 3 17539868 SNP-3.17538649. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1646 3 17544513 SNP-3.17543294. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 | |
| 1647 3 17548078 SNP-3.17546859. C A . . PR;EFF=start_lost(HIGH|MISSENSE|aTg/aAg|p.Met1?/c.2C>A|135|LOC_Os03g30770|protein_coding|CODING|LOC_Os03g30770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g30770|LOC_Os03g30770|1|1.00) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1648 3 17548141 SNP-3.17546922. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro22Arg/c.65A>G|135|LOC_Os03g30770|protein_coding|CODING|LOC_Os03g30770.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1649 3 17549444 SNP-3.17548225. C A . . PR;EFF=synonymous_variant(LOW||gAg/gAg|p.Glu108Glu/c.323C>A|137|LOC_Os03g30780|protein_coding|CODING|LOC_Os03g30780.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1650 3 17552952 SNP-3.17551733. A G . . PR;EFF=intron_variant(MODIFIER|||c.573+23T>C|374|LOC_Os03g30790|protein_coding|CODING|LOC_Os03g30790.1|5|1) GT 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. | |
| 1651 3 17554980 SNP-3.17553761. C A . . PR;EFF=intron_variant(MODIFIER|||c.184-884G>T|374|LOC_Os03g30790|protein_coding|CODING|LOC_Os03g30790.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1652 3 17559872 SNP-3.17558653. A G . . PR;EFF=intron_variant(MODIFIER|||c.293-183A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|2|1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 | |
| 1653 3 17560581 SNP-3.17559362. A G . . PR;EFF=intron_variant(MODIFIER|||c.346-59A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|3|1) GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1654 3 17561005 SNP-3.17559786. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu237Leu/c.711C>A|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1655 3 17561063 SNP-3.17559844. A G . . PR;EFF=synonymous_variant(LOW||Gag/Gag|p.Glu257Glu/c.769A>G|268|LOC_Os03g30800|protein_coding|CODING|LOC_Os03g30800.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1656 3 17561435 SNP-3.17560216. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1657 3 17561589 SNP-3.17560370. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 | |
| 1658 3 17561662 SNP-3.17560443. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1659 3 17562785 SNP-3.17561566. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aat/Tat|p.Asn830Tyr/c.2488G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1660 3 17562831 SNP-3.17561612. C A . . PR;EFF=synonymous_variant(LOW||taT/taT|p.Tyr814Tyr/c.2442G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1661 3 17562934 SNP-3.17561715. A G . . PR;EFF=synonymous_variant(LOW||gCg/gCg|p.Ala780Ala/c.2339T>C|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1662 3 17563063 SNP-3.17561844. C A . . PR;EFF=intron_variant(MODIFIER|||c.2236-26G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|7|1) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1663 3 17563250 SNP-3.17562031. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr706Ser/c.2116G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1664 3 17563979 SNP-3.17562760. C A . . PR;EFF=intron_variant(MODIFIER|||c.1485-19G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|5|1) GT 0/0 0/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1665 3 17564067 SNP-3.17562848. C A . . PR;EFF=intron_variant(MODIFIER|||c.1485-107G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|5|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1666 3 17565100 SNP-3.17563881. C A . . PR;EFF=intron_variant(MODIFIER|||c.912+51G>T|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|2|1) GT 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 | |
| 1667 3 17565577 SNP-3.17564358. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cCg|p.Gln174Pro/c.521T>C|1136|LOC_Os03g30810|protein_coding|CODING|LOC_Os03g30810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. 1/1 0/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 | |
| 1668 3 17566239 SNP-3.17565020. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1669 3 17569115 SNP-3.17567896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1670 3 17569291 SNP-3.17568072. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1671 3 17571662 SNP-3.17570443. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgG/cgC|p.Arg29Arg/c.87T>C|188|LOC_Os03g30830|protein_coding|CODING|LOC_Os03g30830.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1672 3 17572718 SNP-3.17571499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1673 3 17575636 SNP-3.17574417. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1674 3 17576639 SNP-3.17575420. A G . . PR;EFF=synonymous_variant(LOW||ggG/ggG|p.Gly39Gly/c.117A>G|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 | |
| 1675 3 17576948 SNP-3.17575729. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser142Ser/c.426C>A|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1676 3 17576971 SNP-3.17575752. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aGg|p.Thr150Arg/c.449A>G|179|LOC_Os03g30840|protein_coding|CODING|LOC_Os03g30840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 | |
| 1677 3 17577331 SNP-3.17576112. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1678 3 17578832 SNP-3.17577613. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1679 3 17579282 SNP-3.17578063. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1680 3 17579520 SNP-3.17578301. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1681 3 17580566 SNP-3.17579347. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1682 3 17580647 SNP-3.17579428. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1683 3 17582407 SNP-3.17581188. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. | |
| 1684 3 17588477 SNP-3.17587258. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gGg|p.Glu92Gly/c.275A>G|321|LOC_Os03g30870|protein_coding|CODING|LOC_Os03g30870.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 ./. | |
| 1685 3 17589116 SNP-3.17587897. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggA|p.Gly291Gly/c.873C>A|321|LOC_Os03g30870|protein_coding|CODING|LOC_Os03g30870.1|2|1) GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1686 3 17590927 SNP-3.17589708. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 | |
| 1687 3 17591211 SNP-3.17589992. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1688 3 17591506 SNP-3.17590287cg. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 1689 3 17591879 SNP-3.17590660. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1690 3 17592358 SNP-3.17591139. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1691 3 17593386 SNP-3.17592167. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1692 3 17593464 SNP-3.17592245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1693 3 17594845 SNP-3.17593626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1694 3 17595808 SNP-3.17594589. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1695 3 17596615 SNP-3.17595396. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1696 3 17598380 SNP-3.17597161. A G . . PR;EFF=intron_variant(MODIFIER|||c.139-68T>C|194|LOC_Os03g30880|protein_coding|CODING|LOC_Os03g30880.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1697 3 17598768 SNP-3.17597549. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1698 3 17599074 SNP-3.17597855. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1699 3 17600387 SNP-3.17599168. A G . . PR;EFF=intron_variant(MODIFIER|||c.-79-378A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|1|1),intron_variant(MODIFIER|||c.-183-637A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|1|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1700 3 17602120 SNP-3.17600901. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAt/aGt|p.Asn426Ser/c.1277A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1),missense_variant(MODERATE|MISSENSE|aAt/aGt|p.Asn305Ser/c.914A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1701 3 17602951 SNP-3.17601732. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg703Arg/c.2108A>G|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cGa/cGa|p.Arg582Arg/c.1745A>G|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1702 3 17603083 SNP-3.17601864. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser747Asn/c.2240C>A|856|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser626Asn/c.1877C>A|735|LOC_Os03g30890|protein_coding|CODING|LOC_Os03g30890.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1703 3 17605753 SNP-3.17604534. A G . . PR;EFF=synonymous_variant(LOW||tGt/tGt|p.Cys161Cys/c.482A>G|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1704 3 17606218 SNP-3.17604999. C A . . PR;EFF=intron_variant(MODIFIER|||c.892+55C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1705 3 17606459 SNP-3.17605240. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgt/Agt|p.Cys345Ser/c.1033C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1706 3 17607362 SNP-3.17606143. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Caa/Aaa|p.Gln646Lys/c.1936C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1707 3 17607398 SNP-3.17606179. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys658Ser/c.1972C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1708 3 17607425 SNP-3.17606206. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys667Lys/c.1999C>A|774|LOC_Os03g30910|protein_coding|CODING|LOC_Os03g30910.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1709 3 17610485 SNP-3.17609266. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1710 3 17610961 SNP-3.17609742. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1711 3 17611345 SNP-3.17610126. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||1421|c.-348A>G|250|LOC_Os03g30920|protein_coding|CODING|LOC_Os03g30920.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1712 3 17613346 SNP-3.17612127. C A . . PR;EFF=synonymous_variant(LOW||cAg/cAg|p.Gln194Gln/c.581C>A|250|LOC_Os03g30920|protein_coding|CODING|LOC_Os03g30920.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1713 3 17614049 SNP-3.17612830. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1714 3 17615482 SNP-3.17614263. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1715 3 17616753 SNP-3.17615534. A G . . PR;EFF=intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.2|5|1),intron_variant(MODIFIER|||c.*3-15T>C|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|6|1),intron_variant(MODIFIER|||c.514-15T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.5|5|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1716 3 17621240 SNP-3.17620021. A G . . PR;EFF=intron_variant(MODIFIER|||c.-389-574T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-389-574T>C|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-358-574T>C|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 | |
| 1717 3 17621876 SNP-3.17620657. C A . . PR;EFF=intron_variant(MODIFIER|||c.-390+157G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-390+157G>T|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-359+157G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1718 3 17621997 SNP-3.17620778. C A . . PR;EFF=intron_variant(MODIFIER|||c.-390+36G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.1|1|1),intron_variant(MODIFIER|||c.-390+36G>T|173|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.3|1|1),intron_variant(MODIFIER|||c.-359+36G>T|229|LOC_Os03g30934|protein_coding|CODING|LOC_Os03g30934.4|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 | |
| 1719 3 17623026 SNP-3.17621807. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 | |
| 1720 3 17623785 SNP-3.17622566. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcT|p.Ala403Ala/c.1209G>T|418|LOC_Os03g30950|protein_coding|CODING|LOC_Os03g30950.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 | |
| 1721 3 17625611 SNP-3.17624392. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 1722 3 17626123 SNP-3.17624904. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 1723 3 17627375 SNP-3.17626156. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1724 3 17634856 SNP-3.17633637. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1725 3 17634974 SNP-3.17633755. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1726 3 17635011 SNP-3.17633792. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 | |
| 1727 3 17636302 SNP-3.17635083. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1728 3 17639132 SNP-3.17637913. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1729 3 17639226 SNP-3.17638007. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1730 3 17642147 SNP-3.17640928. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1731 3 17643112 SNP-3.17641893. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1732 3 17643875 SNP-3.17642656. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 | |
| 1733 3 17644445 SNP-3.17643226. A G . . PR;EFF=intron_variant(MODIFIER|||c.57+364A>G|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1734 3 17644856 SNP-3.17643637. C A . . PR;EFF=intron_variant(MODIFIER|||c.58-126C>A|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|1|1) GT ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1735 3 17647013 SNP-3.17645794. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggA|p.Gly439Gly/c.1317C>A|628|LOC_Os03g30980|protein_coding|CODING|LOC_Os03g30980.1|5|1) GT 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1736 3 17650140 SNP-3.17648921. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcT|p.Ala1085Ala/c.3255G>T|1547|LOC_Os03g30990|protein_coding|CODING|LOC_Os03g30990.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1737 3 17662282 SNP-3.17661063. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro147Pro/c.441C>A|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1738 3 17664128 SNP-3.17662909. A G . . PR;EFF=intron_variant(MODIFIER|||c.765+1161A>G|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|8|1) GT 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 1/1 | |
| 1739 3 17667100 SNP-3.17665881. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe601Leu/c.1803C>A|692|LOC_Os03g31000|protein_coding|CODING|LOC_Os03g31000.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1740 3 17667874 SNP-3.17666655. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1741 3 17670005 SNP-3.17668786. A G . . PR;EFF=intron_variant(MODIFIER|||c.303+352A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|2|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1742 3 17671978 SNP-3.17670759. A G . . PR;EFF=synonymous_variant(LOW||Gct/Gct|p.Ala336Ala/c.1006A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1743 3 17672027 SNP-3.17670808. A G . . PR;EFF=intron_variant(MODIFIER|||c.1023+32A>G|525|LOC_Os03g31010|protein_coding|CODING|LOC_Os03g31010.1|7|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1744 3 17675851 SNP-3.17674632. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|1|1),5_prime_UTR_premature_start_codon_gain_variant(LOW||||123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|1|1),5_prime_UTR_variant(MODIFIER||847|c.-736A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|1|1),5_prime_UTR_variant(MODIFIER||847|c.-736A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|1|1) GT 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. | |
| 1745 3 17676214 SNP-3.17674995. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||484|c.-484C>A|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||484|c.-484C>A|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1746 3 17676653 SNP-3.17675434. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||45|c.-45A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||45|c.-45A>G|123|LOC_Os03g31026|protein_coding|CODING|LOC_Os03g31026.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 | |
| 1747 3 17678550 SNP-3.17677331. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1748 3 17678991 SNP-3.17677772. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1749 3 17683160 SNP-3.17681941. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cCt|p.His351Pro/c.1052T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||526|c.-526T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1750 3 17683326 SNP-3.17682107. A G . . PR;EFF=intron_variant(MODIFIER|||c.-676-16T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|7|1),intron_variant(MODIFIER|||c.902-16T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|9|1) GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1751 3 17687960 SNP-3.17686741. A G . . PR;EFF=intron_variant(MODIFIER|||c.-1796-52T>C|167|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.1|1|1),intron_variant(MODIFIER|||c.49-52T>C|616|LOC_Os03g31044|protein_coding|CODING|LOC_Os03g31044.2|1|1) GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 | |
| 1752 3 17688883 SNP-3.17687664. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1753 3 17689826 SNP-3.17688607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1754 3 17691873 SNP-3.17690654. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 | |
| 1755 3 17692504 SNP-3.17691285. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1756 3 17695096 SNP-3.17693877. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 | |
| 1757 3 17697028 SNP-3.17695809. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggT/ggA|p.Gly61Gly/c.183C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 1758 3 17697157 SNP-3.17695938. C A . . PR;EFF=synonymous_variant(LOW||ccA/ccA|p.Pro104Pro/c.312C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1759 3 17697224 SNP-3.17696005. A G . . PR;EFF=synonymous_variant(LOW||Ggg/Ggg|p.Gly127Gly/c.379A>G|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 | |
| 1760 3 17697781 SNP-3.17696562. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu215Leu/c.645A>G|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1761 3 17697883 SNP-3.17696664. C A . . PR;EFF=synonymous_variant(LOW||ttA/ttA|p.Leu249Leu/c.747C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1762 3 17698451 SNP-3.17697232. C A . . PR;EFF=synonymous_variant(LOW|SILENT|atC/atA|p.Ile316Ile/c.948C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1763 3 17698502 SNP-3.17697283. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe333Leu/c.999C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1764 3 17698841 SNP-3.17697622. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taA|p.Tyr446*/c.1338C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g31060|LOC_Os03g31060|1|1.00);NMD=(LOC_Os03g31060|LOC_Os03g31060|1|1.00) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1765 3 17698925 SNP-3.17697706. C A . . PR;EFF=synonymous_variant(LOW||gcA/gcA|p.Ala474Ala/c.1422C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1766 3 17699075 SNP-3.17697856. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu524Leu/c.1572C>A|618|LOC_Os03g31060|protein_coding|CODING|LOC_Os03g31060.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1767 3 17700323 SNP-3.17699104. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1768 3 17700524 SNP-3.17699305. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1769 3 17702270 SNP-3.17701051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1770 3 17702415 SNP-3.17701196. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 1771 3 17710758 SNP-3.17709539. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 1772 3 17710982 SNP-3.17709763. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1773 3 17713163 SNP-3.17711944. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 | |
| 1774 3 17714585 SNP-3.17713366. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1775 3 17714710 SNP-3.17713491. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1776 3 17716008 SNP-3.17714789. A G . . PR;EFF=intron_variant(MODIFIER|||c.181+59A>G|146|LOC_Os03g31090|protein_coding|CODING|LOC_Os03g31090.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 | |
| 1777 3 17717694 SNP-3.17716475. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1778 3 17717750 SNP-3.17716531. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1779 3 17718986 SNP-3.17717767. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1780 3 17721273 SNP-3.17720054. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aTt|p.Ser180Ile/c.539G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.1|2|1),missense_variant(MODERATE|MISSENSE|aGt/aTt|p.Ser180Ile/c.539G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.2|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1781 3 17721786 SNP-3.17720567. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCc/tTc|p.Ser9Phe/c.26G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|tCc/tTc|p.Ser9Phe/c.26G>T|417|LOC_Os03g31110|protein_coding|CODING|LOC_Os03g31110.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1782 3 17723480 SNP-3.17722261. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggG/ggT|p.Gly178Gly/c.534G>T|202|LOC_Os03g31120|protein_coding|CODING|LOC_Os03g31120.1|3|1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 1783 3 17723948 SNP-3.17722729. C A . . PR;EFF=intron_variant(MODIFIER|||c.397-22G>T|202|LOC_Os03g31120|protein_coding|CODING|LOC_Os03g31120.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1784 3 17725427 SNP-3.17724208. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1785 3 17725668 SNP-3.17724449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1786 3 17729295 SNP-3.17728076. C A . . PR;EFF=intron_variant(MODIFIER|||c.427-50C>A|1518|LOC_Os03g31134|protein_coding|CODING|LOC_Os03g31134.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1787 3 17729801 SNP-3.17728582. C A . . PR;EFF=intron_variant(MODIFIER|||c.521+362C>A|1518|LOC_Os03g31134|protein_coding|CODING|LOC_Os03g31134.1|5|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1788 3 17737118 SNP-3.17735899. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1789 3 17737696 SNP-3.17736477. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1790 3 17739317 SNP-3.17738098. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|gtG/gtA|p.Val373Val/c.1119C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1791 3 17740471 SNP-3.17739252. C A . . PR;EFF=intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|2|1),intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|2|1),intron_variant(MODIFIER|||c.1852-133C>A|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|2|1) GT 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 1792 3 17741343 SNP-3.17740124. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||668|c.*668A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.1|3|1),3_prime_UTR_variant(MODIFIER||668|c.*421A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.3|4|1),3_prime_UTR_variant(MODIFIER||668|c.*229A>G|640|LOC_Os03g31150|protein_coding|CODING|LOC_Os03g31150.2|4|1) GT ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1793 3 17743311 SNP-3.17742092ga. A G . . PR;EFF=intron_variant(MODIFIER|||c.*296-407A>G|122|LOC_Os03g31160|protein_coding|CODING|LOC_Os03g31160.1|2|1) GT ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1794 3 17743358 SNP-3.17742139. A G . . PR;EFF=intron_variant(MODIFIER|||c.*296-360A>G|122|LOC_Os03g31160|protein_coding|CODING|LOC_Os03g31160.1|2|1) GT ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. | |
| 1795 3 17744426 SNP-3.17743207. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 | |
| 1796 3 17746158 SNP-3.17744939. C A . . PR;EFF=intron_variant(MODIFIER|||c.857+130G>T|322|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.1|8|1),intron_variant(MODIFIER|||c.*225+130G>T|258|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.3|7|1),intron_variant(MODIFIER|||c.722-401G>T|244|LOC_Os03g31170|protein_coding|CODING|LOC_Os03g31170.2|7|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1797 3 17749213 SNP-3.17747994. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1798 3 17749696 SNP-3.17748477. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1799 3 17749998 SNP-3.17748779. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 | |
| 1800 3 17750962 SNP-3.17749743. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1801 3 17752329 SNP-3.17751110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1802 3 17752493 SNP-3.17751274. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 | |
| 1803 3 17752871 SNP-3.17751652. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1804 3 17753299 SNP-3.17752080. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1805 3 17753741 SNP-3.17752522. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1806 3 17755529 SNP-3.17754310. C A . . PR;EFF=intron_variant(MODIFIER|||c.-57+596C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|1|1),intron_variant(MODIFIER|||c.-49+596C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|1|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1807 3 17756804 SNP-3.17755585. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val48Asp/c.143C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val48Asp/c.143C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1808 3 17759634 SNP-3.17758415. C A . . PR;EFF=intron_variant(MODIFIER|||c.1648-104C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|4|1),intron_variant(MODIFIER|||c.*1096-104C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|3|1),intron_variant(MODIFIER|||c.106-104C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|3|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1809 3 17759705 SNP-3.17758486. C A . . PR;EFF=intron_variant(MODIFIER|||c.1648-33C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|4|1),intron_variant(MODIFIER|||c.*1096-33C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|3|1),intron_variant(MODIFIER|||c.106-33C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|3|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1810 3 17760048 SNP-3.17758829. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro621Pro/c.1863A>G|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|6|1),synonymous_variant(LOW|SILENT|ccA/ccG|p.Pro107Pro/c.321A>G|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|5|1),3_prime_UTR_variant(MODIFIER||2115|c.*1311A>G|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|5|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 | |
| 1811 3 17761017 SNP-3.17759798. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||3084|c.*2087C>A|423|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.2|7|1),3_prime_UTR_variant(MODIFIER||419|c.*419C>A|739|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.1|8|1),3_prime_UTR_variant(MODIFIER||419|c.*419C>A|225|LOC_Os03g31180|protein_coding|CODING|LOC_Os03g31180.3|7|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1812 3 17769310 SNP-3.17768091. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1813 3 17772479 SNP-3.17771260. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1814 3 17772942 SNP-3.17771723. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1815 3 17776061 SNP-3.17774842. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr430Thr/c.1290C>A|490|LOC_Os03g31210|protein_coding|CODING|LOC_Os03g31210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1816 3 17776178 SNP-3.17774959. C A . . PR;EFF=synonymous_variant(LOW||ggA/ggA|p.Gly469Gly/c.1407C>A|490|LOC_Os03g31210|protein_coding|CODING|LOC_Os03g31210.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1817 3 17777038 SNP-3.17775819. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1818 3 17777759 SNP-3.17776540. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 1819 3 17781236 SNP-3.17780017. A G . . PR;EFF=intron_variant(MODIFIER|||c.-6-416A>G|520|LOC_Os03g31230|protein_coding|CODING|LOC_Os03g31230.1|1|1),intron_variant(MODIFIER|||c.-6-416A>G|520|LOC_Os03g31230|protein_coding|CODING|LOC_Os03g31230.2|1|1) GT 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. | |
| 1820 3 17787709 SNP-3.17786490. A G . . PR;EFF=synonymous_variant(LOW||gCc/gCc|p.Ala401Ala/c.1202T>C|417|LOC_Os03g31240|protein_coding|CODING|LOC_Os03g31240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1821 3 17788017 SNP-3.17786798. A G . . PR;EFF=synonymous_variant(LOW||cgC/cgC|p.Arg298Arg/c.894T>C|417|LOC_Os03g31240|protein_coding|CODING|LOC_Os03g31240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 | |
| 1822 3 17789783 SNP-3.17788564. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1823 3 17790869 SNP-3.17789650. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1824 3 17792735 SNP-3.17791516. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1825 3 17794718 SNP-3.17793499. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1826 3 17795243 SNP-3.17794024. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 | |
| 1827 3 17795350 SNP-3.17794131. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1828 3 17796195 SNP-3.17794976. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1829 3 17797088 SNP-3.17795869. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1830 3 17798652 SNP-3.17797433. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 | |
| 1831 3 17799588 SNP-3.17798369. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 | |
| 1832 3 17802464 SNP-3.17801245. A G . . PR;EFF=synonymous_variant(LOW||tCa/tCa|p.Ser91Ser/c.272T>C|100|LOC_Os03g31254|protein_coding|CODING|LOC_Os03g31254.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1833 3 17802533 SNP-3.17801314. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cTa|p.Arg68Leu/c.203G>T|100|LOC_Os03g31254|protein_coding|CODING|LOC_Os03g31254.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1834 3 17803332 SNP-3.17802113. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 1835 3 17805262 SNP-3.17804043. C A . . PR;EFF=intron_variant(MODIFIER|||c.318+40G>T|189|LOC_Os03g31260|protein_coding|CODING|LOC_Os03g31260.1|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1836 3 17806401 SNP-3.17805182. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1837 3 17806488 SNP-3.17805269. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1838 3 17806804 SNP-3.17805585. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1839 3 17810344 SNP-3.17809125. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1840 3 17811027 SNP-3.17809808. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1841 3 17811450 SNP-3.17810231. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 1842 3 17811831 SNP-3.17810612. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro72Pro/c.215T>C|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1843 3 17812437 SNP-3.17811218. C A . . PR;EFF=intron_variant(MODIFIER|||c.38-222G>T|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|1|1) GT 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1844 3 17812885 SNP-3.17811666. C A . . PR;EFF=intron_variant(MODIFIER|||c.37+287G>T|150|LOC_Os03g31270|protein_coding|CODING|LOC_Os03g31270.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1845 3 17814827 SNP-3.17813608. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1846 3 17815796 SNP-3.17814577. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 1847 3 17815870 SNP-3.17814651. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1848 3 17816430 SNP-3.17815211. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1849 3 17817749 SNP-3.17816530. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1850 3 17818220 SNP-3.17817001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 | |
| 1851 3 17818324 SNP-3.17817105. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu192*/c.574G>T|196|LOC_Os03g31280|protein_coding|CODING|LOC_Os03g31280.1|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1852 3 17822048 SNP-3.17820829. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1853 3 17823232 SNP-3.17822013. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1854 3 17823757 SNP-3.17822538. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1855 3 17824014 SNP-3.17822795. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1856 3 17825278 SNP-3.17824059. C A . . PR;EFF=intron_variant(MODIFIER|||c.136+619C>A|120|LOC_Os03g31290|protein_coding|CODING|LOC_Os03g31290.1|2|1),intron_variant(MODIFIER|||c.136+619C>A|119|LOC_Os03g31290|protein_coding|CODING|LOC_Os03g31290.2|2|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1857 3 17828059 SNP-3.17826840. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1858 3 17828261 SNP-3.17827042. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 | |
| 1859 3 17831799 SNP-3.17830580. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1860 3 17831851 SNP-3.17830632. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 | |
| 1861 3 17834227 SNP-3.17833008. C A . . PR;EFF=intron_variant(MODIFIER|||c.706+576C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1862 3 17835071 SNP-3.17833852. C A . . PR;EFF=intron_variant(MODIFIER|||c.903-25C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|5|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 | |
| 1863 3 17836160 SNP-3.17834941. C A . . PR;EFF=intron_variant(MODIFIER|||c.1108+307C>A|978|LOC_Os03g31300|protein_coding|CODING|LOC_Os03g31300.1|7|1) GT 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 1864 3 17842285 SNP-3.17841066. C A . . PR;EFF=splice_region_variant(LOW|||c.875G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|3|1),3_prime_UTR_variant(MODIFIER||651|c.*135G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.3|3|1),intron_variant(MODIFIER|||c.*130+5G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|3|1),intron_variant(MODIFIER|||c.*19+632G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.1|2|1),intron_variant(MODIFIER|||c.*19+632G>T|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.2|2|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1865 3 17843926 SNP-3.17842707. A G . . PR;EFF=intron_variant(MODIFIER|||c.-59+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.2|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.1|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.3|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.4|1|1),intron_variant(MODIFIER|||c.-74+159T>C|247|LOC_Os03g31310|protein_coding|CODING|LOC_Os03g31310.5|1|1) GT ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1866 3 17845162 SNP-3.17843943. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1867 3 17845517 SNP-3.17844298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1868 3 17846359 SNP-3.17845140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 | |
| 1869 3 17846743 SNP-3.17845524. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1870 3 17846903 SNP-3.17845684. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1871 3 17847862 SNP-3.17846643. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1872 3 17848071 SNP-3.17846852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1873 3 17850031 SNP-3.17848812. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1874 3 17850248 SNP-3.17849029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1875 3 17851173 SNP-3.17849954. C A . . PR;EFF=synonymous_variant(LOW||tTg/tTg|p.Leu197Leu/c.590G>T|267|LOC_Os03g31320|protein_coding|CODING|LOC_Os03g31320.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||tTg/tTg|p.Leu197Leu/c.590G>T|267|LOC_Os03g31320|protein_coding|CODING|LOC_Os03g31320.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1876 3 17854397 SNP-3.17853178. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 1877 3 17854705 SNP-3.17853486. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1878 3 17856249 SNP-3.17855030. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 | |
| 1879 3 17858169 SNP-3.17856950. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1880 3 17858214 SNP-3.17856995. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. | |
| 1881 3 17858548 SNP-3.17857329. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1882 3 17859237 SNP-3.17858018. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala55Pro/c.163T>C|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1883 3 17859404 SNP-3.17858185. C A . . PR;EFF=synonymous_variant(LOW||caT/caT|p.His26His/c.78G>T|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1884 3 17859425 SNP-3.17858206. C A . . PR;EFF=synonymous_variant(LOW||atT/atT|p.Ile19Ile/c.57G>T|71|LOC_Os03g31340|protein_coding|CODING|LOC_Os03g31340.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1885 3 17861061 SNP-3.17859842. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1886 3 17861116 SNP-3.17859897. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. | |
| 1887 3 17861866 SNP-3.17860647. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1888 3 17863220 SNP-3.17862001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1889 3 17864056 SNP-3.17862837. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 1890 3 17865173 SNP-3.17863954. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser224Ser/c.672A>G|496|LOC_Os03g31360|protein_coding|CODING|LOC_Os03g31360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1891 3 17865357 SNP-3.17864138. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tcg/Acg|p.Ser286Thr/c.856C>A|496|LOC_Os03g31360|protein_coding|CODING|LOC_Os03g31360.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1892 3 17872703 SNP-3.17871484. C A . . PR;EFF=synonymous_variant(LOW||gAt/gAt|p.Asp174Asp/c.521C>A|204|LOC_Os03g31370|protein_coding|CODING|LOC_Os03g31370.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 1893 3 17874141 SNP-3.17872922. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1894 3 17877248 SNP-3.17876029. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1895 3 17878064 SNP-3.17876845. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 | |
| 1896 3 17878462 SNP-3.17877243. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. | |
| 1897 3 17878731 SNP-3.17877512. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1898 3 17879535 SNP-3.17878316. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 1899 3 17879666 SNP-3.17878447. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 | |
| 1900 3 17879911 SNP-3.17878692. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1901 3 17879955 SNP-3.17878736. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1902 3 17880337 SNP-3.17879118. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1903 3 17881301 SNP-3.17880082. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1904 3 17881763 SNP-3.17880544. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1905 3 17882403 SNP-3.17881184. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1906 3 17882842 SNP-3.17881623. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1907 3 17891933 SNP-3.17890714. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||205|c.*205C>A|1036|LOC_Os03g31400|protein_coding|CODING|LOC_Os03g31400.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1908 3 17896140 SNP-3.17894921. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1909 3 17896605 SNP-3.17895386. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1910 3 17899309 SNP-3.17898090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 | |
| 1911 3 17900103 SNP-3.17898884. A G . . PR;EFF=intron_variant(MODIFIER|||c.1476-382T>C|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1912 3 17900223 SNP-3.17899004. A G . . PR;EFF=intron_variant(MODIFIER|||c.1476-502T>C|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 1913 3 17900413 SNP-3.17899194. C A . . PR;EFF=intron_variant(MODIFIER|||c.1476-692G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|8|1) GT 0/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 | |
| 1914 3 17902941 SNP-3.17901722. C A . . PR;EFF=intron_variant(MODIFIER|||c.1327-38G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|6|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1915 3 17905010 SNP-3.17903791. C A . . PR;EFF=intron_variant(MODIFIER|||c.170-67G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|1|1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1916 3 17905238 SNP-3.17904019. C A . . PR;EFF=intron_variant(MODIFIER|||c.170-295G>T|611|LOC_Os03g31430|protein_coding|CODING|LOC_Os03g31430.1|1|1) GT ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1917 3 17906462 SNP-3.17905243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 | |
| 1918 3 17906573 SNP-3.17905354. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1919 3 17907372 SNP-3.17906153. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. | |
| 1920 3 17908145 SNP-3.17906926. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1921 3 17909039 SNP-3.17907820. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1922 3 17909506 SNP-3.17908287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 1923 3 17909598 SNP-3.17908379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 | |
| 1924 3 17909991 SNP-3.17908772. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1925 3 17910209 SNP-3.17908990. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 | |
| 1926 3 17910760 SNP-3.17909541. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 1927 3 17911107 SNP-3.17909888. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1928 3 17912986 SNP-3.17911767. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1929 3 17914329 SNP-3.17913110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1930 3 17914983 SNP-3.17913764. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggC|p.Gly154Gly/c.462T>C|179|LOC_Os03g31440|protein_coding|CODING|LOC_Os03g31440.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 0/1 0/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1931 3 17918451 SNP-3.17917232. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1932 3 17920626 SNP-3.17919407. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1933 3 17925657 SNP-3.17924438. C A . . PR;EFF=intron_variant(MODIFIER|||c.44-413G>T|611|LOC_Os03g31446|protein_coding|CODING|LOC_Os03g31446.1|1|1) GT ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 1934 3 17926056 SNP-3.17924837. C A . . PR;EFF=intron_variant(MODIFIER|||c.43+237G>T|611|LOC_Os03g31446|protein_coding|CODING|LOC_Os03g31446.1|1|1) GT ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 1935 3 17933050 SNP-3.17931831. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 | |
| 1936 3 17934255 SNP-3.17933036. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1937 3 17936247 SNP-3.17935028ag. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1938 3 17936587 SNP-3.17935368. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 | |
| 1939 3 17936998 SNP-3.17935779. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1940 3 17937439 SNP-3.17936220. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1941 3 17937570 SNP-3.17936351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 1942 3 17937691 SNP-3.17936472. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1943 3 17938830 SNP-3.17937611. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 | |
| 1944 3 17939626 SNP-3.17938407. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||55|c.-55A>G|327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 | |
| 1945 3 17940982 SNP-3.17939763. A G . . PR;EFF=intron_variant(MODIFIER|||c.570+502A>G|327|LOC_Os03g31490|protein_coding|CODING|LOC_Os03g31490.1|2|1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1946 3 17944076 SNP-3.17942857. C A . . PR;EFF=initiator_codon_variant(LOW|MISSENSE|Atg/Ttg|p.Met1?/c.1G>T|99|LOC_Os03g31500|protein_coding|CODING|LOC_Os03g31500.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1947 3 17944679 SNP-3.17943460. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1948 3 17945505 SNP-3.17944286. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. | |
| 1949 3 17947981 SNP-3.17946762. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1950 3 17948270 SNP-3.17947051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1951 3 17948702 SNP-3.17947483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1952 3 17952951 SNP-3.17951732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 1953 3 17953359 SNP-3.17952140. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1954 3 17954034 SNP-3.17952815. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1955 3 17956417 SNP-3.17955198. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val464Val/c.1392G>T|511|LOC_Os03g31520|protein_coding|CODING|LOC_Os03g31520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 1956 3 17958188 SNP-3.17956969. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. | |
| 1957 3 17963359 SNP-3.17962140. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn147Asn/c.441G>T|1177|LOC_Os03g31530|protein_coding|CODING|LOC_Os03g31530.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1958 3 17964765 SNP-3.17963546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 | |
| 1959 3 17966864 SNP-3.17965645. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1960 3 17966914 SNP-3.17965695. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 1961 3 17967272 SNP-3.17966053. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 | |
| 1962 3 17970951 SNP-3.17969732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1963 3 17971628 SNP-3.17970409. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 1964 3 17972515 SNP-3.17971296. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaA|p.Asn224Lys/c.672C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1965 3 17972810 SNP-3.17971591. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu280Met/c.838C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1966 3 17973107 SNP-3.17971888. C A . . PR;EFF=synonymous_variant(LOW||Ata/Ata|p.Ile379Ile/c.1135C>A|557|LOC_Os03g31542|protein_coding|CODING|LOC_Os03g31542.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1967 3 17976158 SNP-3.17974939. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. | |
| 1968 3 17976415 SNP-3.17975196. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/1 1/1 0/0 | |
| 1969 3 17977120 SNP-3.17975901. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg89Arg/c.266A>G|107|LOC_Os03g31544|protein_coding|CODING|LOC_Os03g31544.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 1970 3 17980378 SNP-3.17979159. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. | |
| 1971 3 17982733 SNP-3.17981514. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 | |
| 1972 3 17982916 SNP-3.17981697. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 | |
| 1973 3 17982990 SNP-3.17981771. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 1974 3 17983222 SNP-3.17982003. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTt/cAt|p.Leu22His/c.65C>A|223|LOC_Os03g31546|protein_coding|CODING|LOC_Os03g31546.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1975 3 17983505 SNP-3.17982286. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp116Glu/c.348A>G|223|LOC_Os03g31546|protein_coding|CODING|LOC_Os03g31546.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1976 3 17984594 SNP-3.17983375. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1977 3 17984801 SNP-3.17983582. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1978 3 17985314 SNP-3.17984095. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 1979 3 17987234 SNP-3.17986015. A G . . PR;EFF=intron_variant(MODIFIER|||c.-87+118A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|2|1),intron_variant(MODIFIER|||c.242+118A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|2|1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 1980 3 17992019 SNP-3.17990800. A G . . PR;EFF=intron_variant(MODIFIER|||c.2413-588A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|6|1),intron_variant(MODIFIER|||c.2122-588A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1981 3 17992271 SNP-3.17991052. A G . . PR;EFF=intron_variant(MODIFIER|||c.2413-336A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|6|1),intron_variant(MODIFIER|||c.2122-336A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|6|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 1982 3 17993746 SNP-3.17992527. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acG|p.Thr1047Thr/c.3141A>G|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acT/acG|p.Thr950Thr/c.2850A>G|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 1983 3 17994360 SNP-3.17993141. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr1069Thr/c.3207C>A|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acG/acA|p.Thr972Thr/c.2916C>A|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 1984 3 17998130 SNP-3.17996911. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys1366Lys/c.4098C>A|1369|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys1269Lys/c.3807C>A|1272|LOC_Os03g31550|protein_coding|CODING|LOC_Os03g31550.2|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1985 3 18001028 SNP-3.17999809. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1986 3 18001240 SNP-3.18000021. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 | |
| 1987 3 18001843 SNP-3.18000624. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1988 3 18002512 SNP-3.18001293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1989 3 18004541 SNP-3.18003322. A G . . PR;EFF=synonymous_variant(LOW||gGt/gGt|p.Gly29Gly/c.86A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 | |
| 1990 3 18005201 SNP-3.18003982. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cAa|p.Arg249Gln/c.746C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 | |
| 1991 3 18005519 SNP-3.18004300. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aGt|p.Thr355Ser/c.1064A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 | |
| 1992 3 18006612 SNP-3.18005393. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val643Asp/c.1928C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1993 3 18007453 SNP-3.18006234. A G . . PR;EFF=synonymous_variant(LOW||cGc/cGc|p.Arg805Arg/c.2414A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 | |
| 1994 3 18007753 SNP-3.18006534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aGa|p.Ile905Arg/c.2714A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 1995 3 18008086 SNP-3.18006867. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe946Leu/c.2838C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1996 3 18008186 SNP-3.18006967. C A . . PR;EFF=intron_variant(MODIFIER|||c.2927+11C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|4|1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 1997 3 18009334 SNP-3.18008115. C A . . PR;EFF=synonymous_variant(LOW||tAc/tAc|p.Tyr1116Tyr/c.3347C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 | |
| 1998 3 18010017 SNP-3.18008798. C A . . PR;EFF=intron_variant(MODIFIER|||c.3647+51C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|9|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 1999 3 18010363 SNP-3.18009144. C A . . PR;EFF=intron_variant(MODIFIER|||c.3827+19C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|11|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2000 3 18010609 SNP-3.18009390. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg1304Gly/c.3910A>G|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2001 3 18010730 SNP-3.18009511. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gAt|p.Val1344Asp/c.4031C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|12|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2002 3 18011285 SNP-3.18010066. C A . . PR;EFF=intron_variant(MODIFIER|||c.4464+39C>A|1500|LOC_Os03g31560|protein_coding|CODING|LOC_Os03g31560.1|13|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 | |
| 2003 3 18012005 SNP-3.18010786. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 | |
| 2004 3 18012176 SNP-3.18010957. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2005 3 18012537 SNP-3.18011318. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2006 3 18013199 SNP-3.18011980. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2007 3 18014557 SNP-3.18013338. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2008 3 18015174 SNP-3.18013955. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2009 3 18017113 SNP-3.18015894. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggC/ggG|p.Gly191Gly/c.573A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2010 3 18018195 SNP-3.18016976. A G . . PR;EFF=intron_variant(MODIFIER|||c.625-61A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2011 3 18018315 SNP-3.18017096. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcG|p.Ser228Ser/c.684A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|5|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2012 3 18018917 SNP-3.18017698. A G . . PR;EFF=intron_variant(MODIFIER|||c.781-27A>G|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2013 3 18019947 SNP-3.18018728. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acA|p.Thr358Thr/c.1074C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 | |
| 2014 3 18020149 SNP-3.18018930. C A . . PR;EFF=splice_region_variant(LOW|||c.1188C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||cgA/cgA|p.Arg396Arg/c.1188C>A|484|LOC_Os03g31570|protein_coding|CODING|LOC_Os03g31570.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2015 3 18022146 SNP-3.18020927. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2016 3 18022434 SNP-3.18021215. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2017 3 18023297 SNP-3.18022078. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2018 3 18023858 SNP-3.18022639. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2019 3 18024093 SNP-3.18022874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2020 3 18027733 SNP-3.18026514. C A . . PR;EFF=intron_variant(MODIFIER|||c.280-109C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|1|1),intron_variant(MODIFIER|||c.280-109C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 2021 3 18027874 SNP-3.18026655. A G . . PR;EFF=synonymous_variant(LOW|SILENT|aaA/aaG|p.Lys104Lys/c.312A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),synonymous_variant(LOW|SILENT|aaA/aaG|p.Lys104Lys/c.312A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2022 3 18030683 SNP-3.18029464. A G . . PR;EFF=intron_variant(MODIFIER|||c.456+2665A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),intron_variant(MODIFIER|||c.456+2665A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 2023 3 18035945 SNP-3.18034726. A G . . PR;EFF=intron_variant(MODIFIER|||c.457-800A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|2|1),intron_variant(MODIFIER|||c.457-800A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|2|1) GT 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2024 3 18037971 SNP-3.18036752. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCa/gGa|p.Ala361Gly/c.1082A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|gCa/gGa|p.Ala361Gly/c.1082A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 | |
| 2025 3 18038175 SNP-3.18036956. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTg/tGg|p.Leu429Trp/c.1286A>G|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|tTg/tGg|p.Leu429Trp/c.1286A>G|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2026 3 18040460 SNP-3.18039241. C A . . PR;EFF=intron_variant(MODIFIER|||c.2749+12C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|12|1),intron_variant(MODIFIER|||c.2749+12C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|12|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2027 3 18041701 SNP-3.18040482. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||369|c.*369C>A|1056|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||369|c.*369C>A|1052|LOC_Os03g31594|protein_coding|CODING|LOC_Os03g31594.2|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2028 3 18041916 SNP-3.18040697. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2029 3 18042800 SNP-3.18041581. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2030 3 18043099 SNP-3.18041880. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2031 3 18043844 SNP-3.18042625. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2032 3 18043944 SNP-3.18042725. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2033 3 18044408 SNP-3.18043189. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. ./. 0/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2034 3 18044523 SNP-3.18043304. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2035 3 18044759 SNP-3.18043540. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 | |
| 2036 3 18044873 SNP-3.18043654. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2037 3 18045182 SNP-3.18043963. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2038 3 18046030 SNP-3.18044811. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val5Glu/c.14C>A|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2039 3 18046077 SNP-3.18044858. A G . . PR;EFF=synonymous_variant(LOW||Gga/Gga|p.Gly21Gly/c.61A>G|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 | |
| 2040 3 18048585 SNP-3.18047366. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acA/acG|p.Thr729Thr/c.2187A>G|1232|LOC_Os03g31620|protein_coding|CODING|LOC_Os03g31620.1|5|1) GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2041 3 18053020 SNP-3.18051801. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTt/tAt|p.Phe4Tyr/c.11C>A|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2042 3 18053071 SNP-3.18051852. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTc/cGc|p.Leu21Arg/c.62A>G|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 | |
| 2043 3 18054349 SNP-3.18053130. A G . . PR;EFF=synonymous_variant(LOW||aGc/aGc|p.Ser447Ser/c.1340A>G|788|LOC_Os03g31630|protein_coding|CODING|LOC_Os03g31630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 | |
| 2044 3 18062019 SNP-3.18060800. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2045 3 18063349 SNP-3.18062130. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 | |
| 2046 3 18063776 SNP-3.18062557. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 2047 3 18066116 SNP-3.18064897. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 2048 3 18068233 SNP-3.18067014. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp276Asp/c.826A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 | |
| 2049 3 18068263 SNP-3.18067044. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cac/Aac|p.His286Asn/c.856C>A|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1) GT 0/0 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2050 3 18068326 SNP-3.18067107. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Caa/Gaa|p.Gln307Glu/c.919A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2051 3 18068469 SNP-3.18067250. A G . . PR;EFF=splice_acceptor_variant(HIGH|||c.981A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|3|1),intron_variant(MODIFIER|||c.981-1A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|2|1);LOF=(LOC_Os03g31640|LOC_Os03g31640|1|1.00) GT 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2052 3 18068608 SNP-3.18067389. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|agC/agG|p.Ser373Arg/c.1119A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 | |
| 2053 3 18069083 SNP-3.18067864. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cAt|p.Arg482His/c.1445C>A|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2054 3 18069191 SNP-3.18067972. A G . . PR;EFF=synonymous_variant(LOW||gcG/gcG|p.Ala493Ala/c.1479A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 2055 3 18069653 SNP-3.18068434. A G . . PR;EFF=intron_variant(MODIFIER|||c.1760-48A>G|700|LOC_Os03g31640|protein_coding|CODING|LOC_Os03g31640.1|6|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 2056 3 18070684 SNP-3.18069465. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His1225Leu/c.3674G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 | |
| 2057 3 18071668 SNP-3.18070449. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gaa/Taa|p.Glu983*/c.2947G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|3|1);LOF=(LOC_Os03g31650|LOC_Os03g31650|1|1.00);NMD=(LOC_Os03g31650|LOC_Os03g31650|1|1.00) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 2058 3 18074088 SNP-3.18072869. C A . . PR;EFF=intron_variant(MODIFIER|||c.1110-132G>T|1227|LOC_Os03g31650|protein_coding|CODING|LOC_Os03g31650.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2059 3 18076201 SNP-3.18074982. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 | |
| 2060 3 18076436 SNP-3.18075217. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 | |
| 2061 3 18078290 SNP-3.18077071. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2062 3 18079786 SNP-3.18078567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 | |
| 2063 3 18079936 SNP-3.18078717. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTt/aAt|p.Ile32Asn/c.95C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2064 3 18080256 SNP-3.18079037. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu139Met/c.415C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2065 3 18080395 SNP-3.18079176. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cAg|p.Leu185Gln/c.554C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2066 3 18080830 SNP-3.18079611. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGg/aAg|p.Arg330Lys/c.989C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2067 3 18080836 SNP-3.18079617. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCc/tGc|p.Ser332Cys/c.995A>G|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.995A>G|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2068 3 18081440 SNP-3.18080221. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaC/aaA|p.Asn455Lys/c.1365C>A|571|LOC_Os03g31660|protein_coding|CODING|LOC_Os03g31660.1|2|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2069 3 18082040 SNP-3.18080821. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcT|p.Ala156Ala/c.468G>T|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. | |
| 2070 3 18082263 SNP-3.18081044. A G . . PR;EFF=intron_variant(MODIFIER|||c.351-106T>C|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 | |
| 2071 3 18082361 SNP-3.18081142. A G . . PR;EFF=intron_variant(MODIFIER|||c.350+145T>C|173|LOC_Os03g31670|protein_coding|CODING|LOC_Os03g31670.1|2|1) GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 | |
| 2072 3 18083205 SNP-3.18081986. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2073 3 18083836 SNP-3.18082617. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2074 3 18083935 SNP-3.18082716. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2075 3 18084528 SNP-3.18083309. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 | |
| 2076 3 18084790 SNP-3.18083571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2077 3 18085078 SNP-3.18083859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2078 3 18086336 SNP-3.18085117. A G . . PR;EFF=intron_variant(MODIFIER|||c.251+256A>G|98|LOC_Os03g31679|protein_coding|CODING|LOC_Os03g31679.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 2079 3 18087754 SNP-3.18086535. C A . . PR;EFF=intron_variant(MODIFIER|||c.1575-5G>T|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|9|1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 | |
| 2080 3 18088128 SNP-3.18086909. A G . . PR;EFF=intron_variant(MODIFIER|||c.1502-32T>C|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|8|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 | |
| 2081 3 18091827 SNP-3.18090608. C A . . PR;EFF=intron_variant(MODIFIER|||c.349+381G>T|576|LOC_Os03g31690|protein_coding|CODING|LOC_Os03g31690.1|2|1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2082 3 18094199 SNP-3.18092980. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2083 3 18095781 SNP-3.18094562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2084 3 18098167 SNP-3.18096948. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2085 3 18098474 SNP-3.18097255. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2086 3 18100013 SNP-3.18098794. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. | |
| 2087 3 18101093 SNP-3.18099874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2088 3 18101803 SNP-3.18100584. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 | |
| 2089 3 18102046 SNP-3.18100827. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 | |
| 2090 3 18107278 SNP-3.18106059. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 | |
| 2091 3 18108444 SNP-3.18107225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2092 3 18109625 SNP-3.18108406. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 | |
| 2093 3 18110366 SNP-3.18109147. A G . . PR;EFF=intron_variant(MODIFIER|||c.104-165T>C|76|LOC_Os03g31706|protein_coding|CODING|LOC_Os03g31706.2|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2094 3 18111046 SNP-3.18109827. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caG/caC|p.Gln18His/c.54T>C|76|LOC_Os03g31706|protein_coding|CODING|LOC_Os03g31706.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2095 3 18112999 SNP-3.18111780. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2096 3 18117044 SNP-3.18115825. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2097 3 18117720 SNP-3.18116501. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 2098 3 18123585 SNP-3.18122366. C A . . PR;EFF=intron_variant(MODIFIER|||c.-13+3845C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2099 3 18125023 SNP-3.18123804. C A . . PR;EFF=intron_variant(MODIFIER|||c.-12-2725C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2100 3 18125204 SNP-3.18123985. A G . . PR;EFF=intron_variant(MODIFIER|||c.-12-2544A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 | |
| 2101 3 18127525 SNP-3.18126306. A G . . PR;EFF=intron_variant(MODIFIER|||c.-12-223A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2102 3 18129260 SNP-3.18128041. A G . . PR;EFF=intron_variant(MODIFIER|||c.68-31A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|3|1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2103 3 18130823 SNP-3.18129604. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp94Glu/c.282C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2104 3 18130888 SNP-3.18129669. C A . . PR;EFF=synonymous_variant(LOW||gAg/gAg|p.Glu116Glu/c.347C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2105 3 18132049 SNP-3.18130830. A G . . PR;EFF=intron_variant(MODIFIER|||c.790+718A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|6|1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2106 3 18134289 SNP-3.18133070. C A . . PR;EFF=intron_variant(MODIFIER|||c.1181+134C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|11|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2107 3 18137206 SNP-3.18135987. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctT/ctA|p.Leu531Leu/c.1593C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2108 3 18137340 SNP-3.18136121. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTc/aAc|p.Ile576Asn/c.1727C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|16|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2109 3 18140715 SNP-3.18139496. A G . . PR;EFF=intron_variant(MODIFIER|||c.1992+32A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|18|1) GT 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 2110 3 18141261 SNP-3.18140042. C A . . PR;EFF=intron_variant(MODIFIER|||c.1993-147C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|18|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2111 3 18141694 SNP-3.18140475. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|caT/caG|p.His725Gln/c.2175A>G|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|20|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 2112 3 18143019 SNP-3.18141800. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||165|c.*69C>A|885|LOC_Os03g31730|protein_coding|CODING|LOC_Os03g31730.1|23|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2113 3 18145208 SNP-3.18143989. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2114 3 18147444 SNP-3.18146225. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2115 3 18148988 SNP-3.18147769. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2116 3 18149311 SNP-3.18148092. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2117 3 18149640 SNP-3.18148421. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 | |
| 2118 3 18151046 SNP-3.18149827. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 2119 3 18151458 SNP-3.18150239. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2120 3 18151506 SNP-3.18150287. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2121 3 18152715 SNP-3.18151496. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2122 3 18154695 SNP-3.18153476. A G . . PR;EFF=intron_variant(MODIFIER|||c.2184+69T>C|887|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.1|13|1),intron_variant(MODIFIER|||c.1707+69T>C|728|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.2|12|1),intron_variant(MODIFIER|||c.2199+69T>C|892|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.3|13|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 2123 3 18158943 SNP-3.18157724. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||343|c.-75G>T|728|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.475-340G>T|887|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.1|2|1),intron_variant(MODIFIER|||c.475-340G>T|892|LOC_Os03g31750|protein_coding|CODING|LOC_Os03g31750.3|2|1) GT 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 | |
| 2124 3 18160285 SNP-3.18159066. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2125 3 18160356 SNP-3.18159137. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2126 3 18162961 SNP-3.18161742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2127 3 18163077 SNP-3.18161858. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 2128 3 18163718 SNP-3.18162499. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2129 3 18163964 SNP-3.18162745. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 2130 3 18164335 SNP-3.18163116. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2131 3 18166088 SNP-3.18164869. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 2132 3 18166305 SNP-3.18165086. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2133 3 18169292 SNP-3.18168073. C A . . PR;EFF=intron_variant(MODIFIER|||c.422+352G>T|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|4|1) GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2134 3 18170132 SNP-3.18168913. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Atg/Ctg|p.Met109Leu/c.325T>C|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2135 3 18170561 SNP-3.18169342. C A . . PR;EFF=intron_variant(MODIFIER|||c.281+80G>T|218|LOC_Os03g31760|protein_coding|CODING|LOC_Os03g31760.1|2|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2136 3 18171460 SNP-3.18170241. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2137 3 18171786 SNP-3.18170567. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2138 3 18175859 SNP-3.18174640. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2139 3 18176323 SNP-3.18175104. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 | |
| 2140 3 18176660 SNP-3.18175441. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2141 3 18176783 SNP-3.18175564. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2142 3 18178565 SNP-3.18177346. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 | |
| 2143 3 18178993 SNP-3.18177774. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 2144 3 18180388 SNP-3.18179169. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2145 3 18180561 SNP-3.18179342. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 | |
| 2146 3 18181071 SNP-3.18179852. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2147 3 18181591 SNP-3.18180372. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2148 3 18184907 SNP-3.18183688. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 | |
| 2149 3 18189053 SNP-3.18187834. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2150 3 18189077 SNP-3.18187858. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 | |
| 2151 3 18190742 SNP-3.18189523. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2152 3 18191154 SNP-3.18189935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 | |
| 2153 3 18194227 SNP-3.18193008. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2154 3 18194382 SNP-3.18193163. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2155 3 18195767 SNP-3.18194548. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 2156 3 18195904 SNP-3.18194685. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2157 3 18197169 SNP-3.18195950. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 | |
| 2158 3 18197577 SNP-3.18196358. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 0/1 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2159 3 18197640 SNP-3.18196421. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 0/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 | |
| 2160 3 18197797 SNP-3.18196578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 | |
| 2161 3 18198206 SNP-3.18196987. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2162 3 18201428 SNP-3.18200209. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2163 3 18202173 SNP-3.18200954. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2164 3 18204250 SNP-3.18203031. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2165 3 18205698 SNP-3.18204479. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2166 3 18206732 SNP-3.18205513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2167 3 18206990 SNP-3.18205771. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2168 3 18207367 SNP-3.18206148. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 | |
| 2169 3 18210131 SNP-3.18208912. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2170 3 18212977 SNP-3.18211758. A G . . PR;EFF=intron_variant(MODIFIER|||c.544-301A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|4|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2171 3 18217394 SNP-3.18216175. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gag/Aag|p.Glu515Lys/c.1543C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2172 3 18218772 SNP-3.18217553. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His963His/c.2888C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|10|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2173 3 18220398 SNP-3.18219179. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.3927C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|12|1),intron_variant(MODIFIER|||c.3927-2C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|11|1);LOF=(LOC_Os03g31839|LOC_Os03g31839|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2174 3 18221043 SNP-3.18219824. A G . . PR;EFF=synonymous_variant(LOW||Gac/Gac|p.Asp1472Asp/c.4414A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|14|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. | |
| 2175 3 18222058 SNP-3.18220839. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu1727Met/c.5179C>A|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|18|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2176 3 18222085 SNP-3.18220866. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Gac|p.Asn1736Asp/c.5206A>G|1837|LOC_Os03g31839|protein_coding|CODING|LOC_Os03g31839.1|18|1) GT 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. | |
| 2177 3 18223715 SNP-3.18222496. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. | |
| 2178 3 18223828 SNP-3.18222609. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2179 3 18224813 SNP-3.18223594. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2180 3 18226980 SNP-3.18225761. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2181 3 18227370 SNP-3.18226151. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2182 3 18229318 SNP-3.18228099. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2183 3 18232933 SNP-3.18231714. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2184 3 18234891 SNP-3.18233672. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. | |
| 2185 3 18235515 SNP-3.18234296. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2186 3 18235969 SNP-3.18234750. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2187 3 18250460 SNP-3.18249241. C A . . PR;EFF=intron_variant(MODIFIER|||c.487-48C>A|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|2|1) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2188 3 18251991 SNP-3.18250772. A G . . PR;EFF=intron_variant(MODIFIER|||c.1800+99A>G|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 | |
| 2189 3 18252450 SNP-3.18251231. A G . . PR;EFF=intron_variant(MODIFIER|||c.1801-540A>G|678|LOC_Os03g31910|protein_coding|CODING|LOC_Os03g31910.1|4|1) GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 | |
| 2190 3 18255353 SNP-3.18254134. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 | |
| 2191 3 18265320 SNP-3.18264101. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 | |
| 2192 3 18265555 SNP-3.18264336. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 | |
| 2193 3 18265571 SNP-3.18264352. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro5Arg/c.14A>G|86|LOC_Os03g31934|protein_coding|CODING|LOC_Os03g31934.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2194 3 18266303 SNP-3.18265084. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2195 3 18268430 SNP-3.18267211. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2196 3 18269402 SNP-3.18268183. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 0/1 ./. 1/1 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 | |
| 2197 3 18270795 SNP-3.18269576. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 | |
| 2198 3 18274457 SNP-3.18273238. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 | |
| 2199 3 18277824 SNP-3.18276605. C A . . PR;EFF=splice_region_variant(LOW|||c.160C>A|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||Aac/Aac|p.Asn54Asn/c.160C>A|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2200 3 18278591 SNP-3.18277372. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro148Arg/c.443A>G|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2201 3 18278747 SNP-3.18277528. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gGt|p.Ala200Gly/c.599A>G|236|LOC_Os03g31940|protein_coding|CODING|LOC_Os03g31940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2202 3 18279472 SNP-3.18278253. A G . . PR;EFF=synonymous_variant(LOW|SILENT|Agg/Cgg|p.Arg150Arg/c.448T>C|213|LOC_Os03g31944|protein_coding|CODING|LOC_Os03g31944.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 | |
| 2203 3 18281115 SNP-3.18279896. C A . . PR;EFF=intron_variant(MODIFIER|||c.432+241C>A|175|LOC_Os03g31950|protein_coding|CODING|LOC_Os03g31950.1|1|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2204 3 18283201 SNP-3.18281982. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2205 3 18284753 SNP-3.18283534. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln9Glu/c.25A>G|87|LOC_Os03g31970|protein_coding|CODING|LOC_Os03g31970.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2206 3 18286194 SNP-3.18284975. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 2207 3 18289270 SNP-3.18288051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2208 3 18289941 SNP-3.18288722. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2209 3 18291412 SNP-3.18290193. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2210 3 18292401 SNP-3.18291182. C A . . PR;EFF=synonymous_variant(LOW||caA/caA|p.Gln254Gln/c.762C>A|1317|LOC_Os03g31986|protein_coding|CODING|LOC_Os03g31986.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. | |
| 2211 3 18299589 SNP-3.18298370. C A . . PR;EFF=intron_variant(MODIFIER|||c.36-166C>A|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2212 3 18299632 SNP-3.18298413. A G . . PR;EFF=intron_variant(MODIFIER|||c.36-123A>G|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2213 3 18299669 SNP-3.18298450. A G . . PR;EFF=intron_variant(MODIFIER|||c.36-86A>G|182|LOC_Os03g31992|protein_coding|CODING|LOC_Os03g31992.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 2214 3 18300383 SNP-3.18299164. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2215 3 18301062 SNP-3.18299843. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2216 3 18305619 SNP-3.18304400. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2217 3 18310618 SNP-3.18309399. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2218 3 18310792 SNP-3.18309573. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 | |
| 2219 3 18318196 SNP-3.18316977. C A . . PR;EFF=synonymous_variant(LOW||ttT/ttT|p.Phe60Phe/c.180G>T|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2220 3 18318613 SNP-3.18317394. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro9Pro/c.26T>C|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 | |
| 2221 3 18318628 SNP-3.18317409. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tTt|p.Ser4Phe/c.11G>T|90|LOC_Os03g32020|protein_coding|CODING|LOC_Os03g32020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2222 3 18319097 SNP-3.18317878. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cAg|p.Pro53Gln/c.158C>A|175|LOC_Os03g32030|protein_coding|CODING|LOC_Os03g32030.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2223 3 18319439 SNP-3.18318220. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aGc|p.Thr167Ser/c.500A>G|175|LOC_Os03g32030|protein_coding|CODING|LOC_Os03g32030.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 | |
| 2224 3 18328011 SNP-3.18326792. A G . . PR;EFF=intron_variant(MODIFIER|||c.617-2174T>C|335|LOC_Os03g32050|protein_coding|CODING|LOC_Os03g32050.1|3|1) GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2225 3 18333137 SNP-3.18331918. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2226 3 18341760 SNP-3.18340541. A G . . PR;EFF=intron_variant(MODIFIER|||c.819+562A>G|575|LOC_Os03g32070|protein_coding|CODING|LOC_Os03g32070.1|3|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2227 3 18347733 SNP-3.18346514. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2228 3 18364447 SNP-3.18363228. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. | |
| 2229 3 18372495 SNP-3.18371276. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2230 3 18372682 SNP-3.18371463. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2231 3 18373365 SNP-3.18372146. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2232 3 18390010 SNP-3.18388791. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 | |
| 2233 3 18407077 SNP-3.18405858. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2234 3 18407351 SNP-3.18406132. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2235 3 18408572 SNP-3.18407353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGa/aTa|p.Arg190Ile/c.569G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 2236 3 18408752 SNP-3.18407533. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCt/gTt|p.Ala130Val/c.389G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 | |
| 2237 3 18409058 SNP-3.18407839. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGc/cTc|p.Arg28Leu/c.83G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|2|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 | |
| 2238 3 18409330 SNP-3.18408111. A G . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||190|c.-104T>C|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. | |
| 2239 3 18409331 SNP-3.18408112. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||191|c.-105T>C|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 2240 3 18409522 SNP-3.18408303. C A . . PR;EFF=5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||382|c.-296G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. | |
| 2241 3 18410408 SNP-3.18409189. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe116Ile/c.346C>A|273|LOC_Os03g32180|protein_coding|CODING|LOC_Os03g32180.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_premature_start_codon_gain_variant(LOW||||240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1268|c.-1182G>T|240|LOC_Os03g32190|protein_coding|CODING|LOC_Os03g32190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2242 3 18435790 SNP-3.18434571. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2243 3 18438070 SNP-3.18436851. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2244 3 18438144 SNP-3.18436925. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2245 3 18439247 SNP-3.18438028. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2246 3 18442144 SNP-3.18440925. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2247 3 18442726 SNP-3.18441507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 | |
| 2248 3 18443068 SNP-3.18441849. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. | |
| 2249 3 18443765 SNP-3.18442546. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2250 3 18444167 SNP-3.18442948. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2251 3 18444805 SNP-3.18443586. C A . . PR;EFF=intron_variant(MODIFIER|||c.252-37C>A|170|LOC_Os03g32250|protein_coding|CODING|LOC_Os03g32250.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 | |
| 2252 3 18458739 SNP-3.18457520. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2253 3 18462480 SNP-3.18461261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2254 3 18463409 SNP-3.18462190. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 | |
| 2255 3 18463744 SNP-3.18462525. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2256 3 18467139 SNP-3.18465920. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 2257 3 18467606 SNP-3.18466387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2258 3 18475869 SNP-3.18474650. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2259 3 18480186 SNP-3.18478967. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 2260 3 18481758 SNP-3.18480539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2261 3 18483130 SNP-3.18481911. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Gat|p.His20Asp/c.58A>G|124|LOC_Os03g32302|protein_coding|CODING|LOC_Os03g32302.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 | |
| 2262 3 18484788 SNP-3.18483569. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 | |
| 2263 3 18490760 SNP-3.18489541. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 | |
| 2264 3 18493244 SNP-3.18492025. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2265 3 18494873 SNP-3.18493654. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 | |
| 2266 3 18495638 SNP-3.18494419. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2267 3 18496206 SNP-3.18494987. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cGg|p.Pro30Arg/c.89A>G|124|LOC_Os03g32330|protein_coding|CODING|LOC_Os03g32330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 | |
| 2268 3 18496335 SNP-3.18495116. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGa/cAa|p.Arg73Gln/c.218C>A|124|LOC_Os03g32330|protein_coding|CODING|LOC_Os03g32330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2269 3 18501666 SNP-3.18500447. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 2270 3 18501950 SNP-3.18500731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 2271 3 18503660 SNP-3.18502441. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2272 3 18503942 SNP-3.18502723. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2273 3 18513093 SNP-3.18511874. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val308Ile/c.922C>A|403|LOC_Os03g32360|protein_coding|CODING|LOC_Os03g32360.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2274 3 18521763 SNP-3.18520544. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys296Lys/c.888C>A|934|LOC_Os03g32380|protein_coding|CODING|LOC_Os03g32380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2275 3 18524055 SNP-3.18522836. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 | |
| 2276 3 18529021 SNP-3.18527802. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly57Glu/c.170C>A|182|LOC_Os03g32390|protein_coding|CODING|LOC_Os03g32390.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2277 3 18530324 SNP-3.18529105. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2278 3 18530788 SNP-3.18529569. C A . . PR;EFF=start_lost(HIGH|MISSENSE|aTg/aAg|p.Met1?/c.2C>A|146|LOC_Os03g32400|protein_coding|CODING|LOC_Os03g32400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME);LOF=(LOC_Os03g32400|LOC_Os03g32400|1|1.00) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2279 3 18531959 SNP-3.18530740. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2280 3 18533769 SNP-3.18532550. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2281 3 18535113 SNP-3.18533894. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2282 3 18535365 SNP-3.18534146. C A . . PR;EFF=synonymous_variant(LOW||aAg/aAg|p.Lys3Lys/c.8C>A|108|LOC_Os03g32410|protein_coding|CODING|LOC_Os03g32410.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2283 3 18542604 SNP-3.18541385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2284 3 18543348 SNP-3.18542129. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2285 3 18544639 SNP-3.18543420. C A . . PR;EFF=intron_variant(MODIFIER|||c.68-298C>A|77|LOC_Os03g32430|protein_coding|CODING|LOC_Os03g32430.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2286 3 18545523 SNP-3.18544304. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2287 3 18548077 SNP-3.18546858. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2288 3 18548882 SNP-3.18547663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2289 3 18549767 SNP-3.18548548. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||359|c.*359G>T|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1) GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2290 3 18550008 SNP-3.18548789. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||118|c.*118T>C|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. | |
| 2291 3 18550225 SNP-3.18549006. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln289His/c.867G>T|321|LOC_Os03g32440|protein_coding|CODING|LOC_Os03g32440.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2292 3 18552549 SNP-3.18551330. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 | |
| 2293 3 18555016 SNP-3.18553797. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2294 3 18555796 SNP-3.18554577. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val57Val/c.171G>T|152|LOC_Os03g32450|protein_coding|CODING|LOC_Os03g32450.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2295 3 18556230 SNP-3.18555011. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2296 3 18558573 SNP-3.18557354. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 | |
| 2297 3 18558627 SNP-3.18557408. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 2298 3 18559120 SNP-3.18557901. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2299 3 18559268 SNP-3.18558049. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||541|c.*541G>T|401|LOC_Os03g32460|protein_coding|CODING|LOC_Os03g32460.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2300 3 18561310 SNP-3.18560091. C A . . PR;EFF=intron_variant(MODIFIER|||c.20-104G>T|401|LOC_Os03g32460|protein_coding|CODING|LOC_Os03g32460.1|1|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 2301 3 18561974 SNP-3.18560755. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2302 3 18564453 SNP-3.18563234. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2303 3 18564499 SNP-3.18563280. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2304 3 18568709 SNP-3.18567490. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 2305 3 18574317 SNP-3.18573098. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGg/cAg|p.Arg394Gln/c.1181C>A|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2306 3 18574632 SNP-3.18573413. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile499Lys/c.1496C>A|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2307 3 18574749 SNP-3.18573530. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val538Gly/c.1613A>G|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 | |
| 2308 3 18575195 SNP-3.18573976. A G . . PR;EFF=synonymous_variant(LOW||gtG/gtG|p.Val660Val/c.1980A>G|701|LOC_Os03g32480|protein_coding|CODING|LOC_Os03g32480.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2309 3 18578550 SNP-3.18577331. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/1 0/0 ./. ./. ./. ./. ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 | |
| 2310 3 18578564 SNP-3.18577345. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. | |
| 2311 3 18578743 SNP-3.18577524. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 | |
| 2312 3 18580725 SNP-3.18579506. C A . . PR;EFF=intron_variant(MODIFIER|||c.114+619C>A|90|LOC_Os03g32499|protein_coding|CODING|LOC_Os03g32499.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 2313 3 18615582 SNP-3.18614363. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 | |
| 2314 3 18617626 SNP-3.18616407. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His558His/c.1673C>A|658|LOC_Os03g32550|protein_coding|CODING|LOC_Os03g32550.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2315 3 18617856 SNP-3.18616637. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys635Ser/c.1903C>A|658|LOC_Os03g32550|protein_coding|CODING|LOC_Os03g32550.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2316 3 18618966 SNP-3.18617747. C A . . PR;EFF=intron_variant(MODIFIER|||c.1804-14G>T|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|4|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2317 3 18618983 SNP-3.18617764. A G . . PR;EFF=intron_variant(MODIFIER|||c.1804-31T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|4|1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2318 3 18620936 SNP-3.18619717. A G . . PR;EFF=intron_variant(MODIFIER|||c.283+42T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|2|1) GT ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 | |
| 2319 3 18621127 SNP-3.18619908. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gCt|p.Val45Ala/c.134T>C|746|LOC_Os03g32560|protein_coding|CODING|LOC_Os03g32560.1|2|1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 | |
| 2320 3 18622401 SNP-3.18621182. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 | |
| 2321 3 18623735 SNP-3.18622516. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 | |
| 2322 3 18625404 SNP-3.18624185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2323 3 18625780 SNP-3.18624561. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2324 3 18625896 SNP-3.18624677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2325 3 18626554 SNP-3.18625335. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2326 3 18627874 SNP-3.18626655. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2327 3 18628603 SNP-3.18627384. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 | |
| 2328 3 18629060 SNP-3.18627841. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2329 3 18632563 SNP-3.18631344. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2330 3 18634358 SNP-3.18633139. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 2331 3 18640611 SNP-3.18639392. C A . . PR;EFF=intron_variant(MODIFIER|||c.1745-28G>T|819|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.1|9|1),intron_variant(MODIFIER|||c.1745-28G>T|685|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.2|9|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2332 3 18645295 SNP-3.18644076. A G . . PR;EFF=intron_variant(MODIFIER|||c.167-904T>C|819|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.1|2|1),intron_variant(MODIFIER|||c.167-904T>C|685|LOC_Os03g32590|protein_coding|CODING|LOC_Os03g32590.2|2|1) GT 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 2333 3 18648463 SNP-3.18647244. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 2334 3 18649030 SNP-3.18647811. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2335 3 18655483 SNP-3.18654264. C A . . PR;EFF=intron_variant(MODIFIER|||c.2422+370G>T|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|5|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 2336 3 18655739 SNP-3.18654520. A G . . PR;EFF=intron_variant(MODIFIER|||c.2422+114T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|5|1) GT 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. | |
| 2337 3 18658396 SNP-3.18657177. A G . . PR;EFF=intron_variant(MODIFIER|||c.1675-75T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|2|1) GT ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 | |
| 2338 3 18659416 SNP-3.18658197. A G . . PR;EFF=intron_variant(MODIFIER|||c.899+6T>C|1183|LOC_Os03g32600|protein_coding|CODING|LOC_Os03g32600.1|1|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2339 3 18662162 SNP-3.18660943. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2340 3 18662402 SNP-3.18661183. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. | |
| 2341 3 18664428 SNP-3.18663209. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. | |
| 2342 3 18667112 SNP-3.18665893. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2343 3 18667892 SNP-3.18666673. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2344 3 18668534 SNP-3.18667315. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2345 3 18672293 SNP-3.18671074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2346 3 18672970 SNP-3.18671751. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2347 3 18673545 SNP-3.18672326. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2348 3 18675080 SNP-3.18673861. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2349 3 18675738 SNP-3.18674519. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2350 3 18681590 SNP-3.18680349. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aCg|p.Lys283Thr/c.848T>C|837|LOC_Os03g32620|protein_coding|CODING|LOC_Os03g32620.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 | |
| 2351 3 18683390 SNP-3.18682149. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 | |
| 2352 3 18683411 SNP-3.18682170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2353 3 18687173 SNP-3.18685932. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAg/gTg|p.Glu710Val/c.2129G>T|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2354 3 18687536 SNP-3.18686295. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aAg/aCg|p.Lys589Thr/c.1766T>C|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 | |
| 2355 3 18688918 SNP-3.18687677. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcA/gcT|p.Ala128Ala/c.384G>T|710|LOC_Os03g32630|protein_coding|CODING|LOC_Os03g32630.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2356 3 18691370 SNP-3.18690129. C A . . PR;EFF=intron_variant(MODIFIER|||c.75+241C>A|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2357 3 18691782 SNP-3.18690541. A G . . PR;EFF=intron_variant(MODIFIER|||c.76-224A>G|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2358 3 18691986 SNP-3.18690745. C A . . PR;EFF=intron_variant(MODIFIER|||c.76-20C>A|71|LOC_Os03g32636|protein_coding|CODING|LOC_Os03g32636.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 2359 3 18692796 SNP-3.18691555. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2360 3 18693936 SNP-3.18692695. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2361 3 18694773 SNP-3.18693532. C A . . PR;EFF=intron_variant(MODIFIER|||c.109-13G>T|111|LOC_Os03g32642|protein_coding|CODING|LOC_Os03g32642.1|1|1) GT ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 | |
| 2362 3 18695016 SNP-3.18693775. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 | |
| 2363 3 18697802 SNP-3.18696561. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 | |
| 2364 3 18697909 SNP-3.18696668. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 | |
| 2365 3 18707780 SNP-3.18706539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2366 3 18710665 SNP-3.18709424. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCt/aTt|p.Thr45Ile/c.134G>T|116|LOC_Os03g32664|protein_coding|CODING|LOC_Os03g32664.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2367 3 18712119 SNP-3.18710878. C A . . PR;EFF=synonymous_variant(LOW||cAg/cAg|p.Gln42Gln/c.125C>A|98|LOC_Os03g32670|protein_coding|CODING|LOC_Os03g32670.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2368 3 18714288 SNP-3.18713047. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 | |
| 2369 3 18716479 SNP-3.18715238. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2370 3 18718548 SNP-3.18717307. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 | |
| 2371 3 18721636 SNP-3.18720395. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2372 3 18722594 SNP-3.18721353. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 | |
| 2373 3 18728215 SNP-3.18726974. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2374 3 18729426 SNP-3.18728185. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. | |
| 2375 3 18730511 SNP-3.18729270. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 | |
| 2376 3 18732079 SNP-3.18730838. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTc/tAc|p.Phe291Tyr/c.872C>A|654|LOC_Os03g32690|protein_coding|CODING|LOC_Os03g32690.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2377 3 18733051 SNP-3.18731810. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acA|p.Thr544Thr/c.1632C>A|654|LOC_Os03g32690|protein_coding|CODING|LOC_Os03g32690.1|4|1) GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2378 3 18733512 SNP-3.18732271. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2379 3 18734715 SNP-3.18733474. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 2380 3 18739438 SNP-3.18738197. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 | |
| 2381 3 18745988 SNP-3.18744747. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2382 3 18747914 SNP-3.18746673. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 2383 3 18749265 SNP-3.18748024. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tCg|p.Trp262Ser/c.785T>C|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 | |
| 2384 3 18749284 SNP-3.18748043. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aaa/Taa|p.Lys256*/c.766G>T|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2385 3 18749395 SNP-3.18748154. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcg/Ccg|p.Ala219Pro/c.655T>C|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 | |
| 2386 3 18749735 SNP-3.18748494. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccT|p.Pro138Pro/c.414G>T|396|LOC_Os03g32730|protein_coding|CODING|LOC_Os03g32730.1|2|1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 2387 3 18750724 SNP-3.18749483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. | |
| 2388 3 18751362 SNP-3.18750121. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agg/Tgg|p.Arg593Trp/c.1777G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2389 3 18751506 SNP-3.18750265. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg545Cys/c.1633G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2390 3 18753459 SNP-3.18752218. C A . . PR;EFF=intron_variant(MODIFIER|||c.463-349G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2391 3 18753953 SNP-3.18752712. C A . . PR;EFF=intron_variant(MODIFIER|||c.462+190G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2392 3 18754343 SNP-3.18753102. C A . . PR;EFF=intron_variant(MODIFIER|||c.373-111G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2393 3 18755603 SNP-3.18754362. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile84Ile/c.251G>T|738|LOC_Os03g32749|protein_coding|CODING|LOC_Os03g32749.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2394 3 18758727 SNP-3.18757486. C A . . PR;EFF=intron_variant(MODIFIER|||c.157-390C>A|476|LOC_Os03g32770|protein_coding|CODING|LOC_Os03g32770.1|1|1) GT ./. 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2395 3 18759891 SNP-3.18758650. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr294Thr/c.880C>A|476|LOC_Os03g32770|protein_coding|CODING|LOC_Os03g32770.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 | |
| 2396 3 18761242 SNP-3.18760001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. | |
| 2397 3 18761440 SNP-3.18760199. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2398 3 18767602 SNP-3.18766361. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2399 3 18767876 SNP-3.18766635. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2400 3 18770394 SNP-3.18769153. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||209|c.*209A>G|191|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||209|c.*209A>G|191|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.2|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||209|c.*209A>G|150|LOC_Os03g32790|protein_coding|CODING|LOC_Os03g32790.3|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 ./. ./. ./. 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 ./. 1/1 ./. 0/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. ./. ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2401 3 18770657 SNP-3.18769416. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2402 3 18770748 SNP-3.18769507. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2403 3 18771856 SNP-3.18770615. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2404 3 18772680 SNP-3.18771439. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2405 3 18773308 SNP-3.18772067. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2406 3 18774925 SNP-3.18773684. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 | |
| 2407 3 18775732 SNP-3.18774491. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu25Leu/c.75C>A|162|LOC_Os03g32810|protein_coding|CODING|LOC_Os03g32810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 2408 3 18775875 SNP-3.18774634. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cAg|p.Leu73Gln/c.218C>A|162|LOC_Os03g32810|protein_coding|CODING|LOC_Os03g32810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2409 3 18776754 SNP-3.18775513. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2410 3 18779415 SNP-3.18778174. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser94Ser/c.282C>A|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 | |
| 2411 3 18779525 SNP-3.18778284. A G . . PR;EFF=synonymous_variant(LOW||tGg/tGg|p.Trp131Trp/c.392A>G|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 | |
| 2412 3 18779961 SNP-3.18778720. A G . . PR;EFF=stop_retained_variant(LOW||taG/taG|p.Ter276Ter/c.828A>G|275|LOC_Os03g32820|protein_coding|CODING|LOC_Os03g32820.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 | |
| 2413 3 18784095 SNP-3.18782854. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttG/ttC|p.Leu62Phe/c.186T>C|105|LOC_Os03g32830|protein_coding|CODING|LOC_Os03g32830.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 | |
| 2414 3 18785749 SNP-3.18784508. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 2415 3 18786421 SNP-3.18785180. A G . . PR;EFF=synonymous_variant(LOW||acG/acG|p.Thr115Thr/c.345A>G|155|LOC_Os03g32840|protein_coding|CODING|LOC_Os03g32840.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. | |
| 2416 3 18787780 SNP-3.18786539. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 | |
| 2417 3 18788889 SNP-3.18787648. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2418 3 18789275 SNP-3.18788034. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2419 3 18791188 SNP-3.18789947. A G . . PR;EFF=intron_variant(MODIFIER|||c.121-130A>G|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|1|1) GT 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 | |
| 2420 3 18791989 SNP-3.18790748. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp264Glu/c.792C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 2421 3 18792338 SNP-3.18791097. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val367Ile/c.1099C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 | |
| 2422 3 18792424 SNP-3.18791183. C A . . PR;EFF=synonymous_variant(LOW||tcA/tcA|p.Ser395Ser/c.1185C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2423 3 18792649 SNP-3.18791408. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu470Leu/c.1410C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 | |
| 2424 3 18792735 SNP-3.18791494. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cGt|p.Pro499Arg/c.1496A>G|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2425 3 18792809 SNP-3.18791568. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtt/Att|p.Val524Ile/c.1570C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2426 3 18793195 SNP-3.18791954. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys606Lys/c.1818C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2427 3 18793546 SNP-3.18792305. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caC/caA|p.His723Gln/c.2169C>A|809|LOC_Os03g32850|protein_coding|CODING|LOC_Os03g32850.1|5|1) GT 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2428 3 18798137 SNP-3.18796896. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2429 3 18798764 SNP-3.18797523. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2430 3 18802486 SNP-3.18801245. A G . . PR;EFF=intron_variant(MODIFIER|||c.463-240T>C|397|LOC_Os03g32860|protein_coding|CODING|LOC_Os03g32860.1|2|1) GT ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. | |
| 2431 3 18805281 SNP-3.18804040. A G . . PR;EFF=synonymous_variant(LOW||cCa/cCa|p.Pro19Pro/c.56T>C|369|LOC_Os03g32870|protein_coding|CODING|LOC_Os03g32870.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 | |
| 2432 3 18805487 SNP-3.18804246. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 2433 3 18807288 SNP-3.18806047. C A . . PR;EFF=intron_variant(MODIFIER|||c.91+214C>A|157|LOC_Os03g32880|protein_coding|CODING|LOC_Os03g32880.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. | |
| 2434 3 18808258 SNP-3.18807017. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Atc|p.Phe135Ile/c.403C>A|157|LOC_Os03g32880|protein_coding|CODING|LOC_Os03g32880.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2435 3 18808464 SNP-3.18807223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2436 3 18808696 SNP-3.18807455. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 | |
| 2437 3 18809082 SNP-3.18807841. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2438 3 18812689 SNP-3.18811448. C A . . PR;EFF=intron_variant(MODIFIER|||c.164-18G>T|503|LOC_Os03g32890|protein_coding|CODING|LOC_Os03g32890.1|1|1) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 | |
| 2439 3 18813873 SNP-3.18812632. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 2440 3 18815144 SNP-3.18813903. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 | |
| 2441 3 18817425 SNP-3.18816184. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. | |
| 2442 3 18826402 SNP-3.18825161. A G . . PR;EFF=intron_variant(MODIFIER|||c.221-268T>C|403|LOC_Os03g32920|protein_coding|CODING|LOC_Os03g32920.1|1|1) GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. | |
| 2443 3 18828845 SNP-3.18827604. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Acc/Tcc|p.Thr403Ser/c.1207G>T|712|LOC_Os03g32930|protein_coding|CODING|LOC_Os03g32930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 | |
| 2444 3 18829038 SNP-3.18827797. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctT|p.Leu338Leu/c.1014G>T|712|LOC_Os03g32930|protein_coding|CODING|LOC_Os03g32930.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. | |
| 2445 3 18834871 SNP-3.18833630. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agt/Tgt|p.Ser240Cys/c.718G>T|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2446 3 18834928 SNP-3.18833687. A G . . PR;EFF=synonymous_variant(LOW||Caa/Caa|p.Gln221Gln/c.661T>C|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2447 3 18835579 SNP-3.18834338. A G . . PR;EFF=intron_variant(MODIFIER|||c.354-204T>C|586|LOC_Os03g32940|protein_coding|CODING|LOC_Os03g32940.1|1|1) GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 | |
| 2448 3 18852669 SNP-3.18851428. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ggA/ggG|p.Gly396Gly/c.1188A>G|401|LOC_Os03g32970|protein_coding|CODING|LOC_Os03g32970.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 | |
| 2449 3 18855626 SNP-3.18854385. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2450 3 18863952 SNP-3.18862711. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2451 3 18865056 SNP-3.18863815. C A . . PR;EFF=intron_variant(MODIFIER|||c.205+739C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2452 3 18865076 SNP-3.18863835. A G . . PR;EFF=intron_variant(MODIFIER|||c.205+759A>G|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2453 3 18865095 SNP-3.18863854. A G . . PR;EFF=intron_variant(MODIFIER|||c.205+778A>G|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2454 3 18865748 SNP-3.18864507. C A . . PR;EFF=intron_variant(MODIFIER|||c.206-189C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2455 3 18866029 SNP-3.18864788. C A . . PR;EFF=synonymous_variant(LOW||Agc/Agc|p.Ser100Ser/c.298C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2456 3 18866047 SNP-3.18864806. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggt/Agt|p.Gly106Ser/c.316C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2457 3 18866067 SNP-3.18864826. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acA|p.Thr112Thr/c.336C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2458 3 18866089 SNP-3.18864848. C A . . PR;EFF=synonymous_variant(LOW||Aca/Aca|p.Thr120Thr/c.358C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2459 3 18866323 SNP-3.18865082. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Agc|p.Arg198Ser/c.592C>A|214|LOC_Os03g33000|protein_coding|CODING|LOC_Os03g33000.1|2|1) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2460 3 18868242 SNP-3.18867001. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2461 3 18868282 SNP-3.18867041. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2462 3 18868406 SNP-3.18867165. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2463 3 18869491 SNP-3.18868250. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. | |
| 2464 3 18869854 SNP-3.18868613. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2465 3 18869855 SNP-3.18868614. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 | |
| 2466 3 18870770 SNP-3.18869529. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2467 3 18870916 SNP-3.18869675. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2468 3 18870952 SNP-3.18869711. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2469 3 18871142 SNP-3.18869901. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2470 3 18872231 SNP-3.18870990at. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2471 3 18872231 SNP-3.18870990ac. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2472 3 18875926 SNP-3.18874685. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2473 3 18875999 SNP-3.18874758. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2474 3 18880737 SNP-3.18879496. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2475 3 18882188 SNP-3.18880947. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2476 3 18883386 SNP-3.18882145. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+595C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2477 3 18884077 SNP-3.18882836. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+1286C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2478 3 18884772 SNP-3.18883531. C A . . PR;EFF=intron_variant(MODIFIER|||c.321+1981C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2479 3 18887307 SNP-3.18886066. A G . . PR;EFF=intron_variant(MODIFIER|||c.322-2108A>G|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2480 3 18889381 SNP-3.18888140. C A . . PR;EFF=intron_variant(MODIFIER|||c.322-34C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2481 3 18891889 SNP-3.18890648. C A . . PR;EFF=intron_variant(MODIFIER|||c.1161-819C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2482 3 18893246 SNP-3.18892005. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||265|c.*265C>A|477|LOC_Os03g33012|protein_coding|CODING|LOC_Os03g33012.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2483 3 18901067 SNP-3.18899826. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Aca|p.Ser209Thr/c.625C>A|351|LOC_Os03g33042|protein_coding|CODING|LOC_Os03g33042.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2484 3 18901541 SNP-3.18900300. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 | |
| 2485 3 18901857 SNP-3.18900616. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/1 0/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2486 3 18902596 SNP-3.18901355. A G . . PR;EFF=synonymous_variant(LOW||ctG/ctG|p.Leu179Leu/c.537A>G|209|LOC_Os03g33044|protein_coding|CODING|LOC_Os03g33044.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 2487 3 18919878 SNP-3.18918637. C A . . PR;EFF=intron_variant(MODIFIER|||c.378-278G>T|242|LOC_Os03g33060|protein_coding|CODING|LOC_Os03g33060.1|2|1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2488 3 18921244 SNP-3.18920003. C A . . PR;EFF=intron_variant(MODIFIER|||c.207-16G>T|242|LOC_Os03g33060|protein_coding|CODING|LOC_Os03g33060.1|1|1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2489 3 18922800 SNP-3.18921559. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile110Ile/c.329G>T|189|LOC_Os03g33070|protein_coding|CODING|LOC_Os03g33070.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2490 3 18923292 SNP-3.18922051. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2491 3 18923377 SNP-3.18922136. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 | |
| 2492 3 18923502 SNP-3.18922261. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2493 3 18924201 SNP-3.18922960. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 | |
| 2494 3 18925620 SNP-3.18924379. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 2495 3 18926620 SNP-3.18925379. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile786Ile/c.2357G>T|819|LOC_Os03g33080|protein_coding|CODING|LOC_Os03g33080.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2496 3 18929154 SNP-3.18927913. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gta/Cta|p.Val20Leu/c.58T>C|819|LOC_Os03g33080|protein_coding|CODING|LOC_Os03g33080.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 | |
| 2497 3 18929968 SNP-3.18928727. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2498 3 18930411 SNP-3.18929170. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2499 3 18930486 SNP-3.18929245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 | |
| 2500 3 18930903 SNP-3.18929662. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2501 3 18932532 SNP-3.18931291. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2502 3 18934236 SNP-3.18932995. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2503 3 18937085 SNP-3.18935844. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. | |
| 2504 3 18937985 SNP-3.18936744. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aat/Cat|p.Asn1224His/c.3670T>C|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|9|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2505 3 18939087 SNP-3.18937846. C A . . PR;EFF=synonymous_variant(LOW||gTt/gTt|p.Val928Val/c.2783G>T|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2506 3 18939114 SNP-3.18937873. C A . . PR;EFF=synonymous_variant(LOW||gTc/gTc|p.Val919Val/c.2756G>T|1370|LOC_Os03g33100|protein_coding|CODING|LOC_Os03g33100.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2507 3 18948677 SNP-3.18947436. C A . . PR;EFF=intron_variant(MODIFIER|||c.101-230C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|1|1) GT 0/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 | |
| 2508 3 18948838 SNP-3.18947597. C A . . PR;EFF=intron_variant(MODIFIER|||c.101-69C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 | |
| 2509 3 18950066 SNP-3.18948825. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcG/gcA|p.Ala351Ala/c.1053C>A|370|LOC_Os03g33110|protein_coding|CODING|LOC_Os03g33110.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 | |
| 2510 3 18950548 SNP-3.18949307. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 | |
| 2511 3 18950913 SNP-3.18949672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 | |
| 2512 3 18964247 SNP-3.18963006. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2513 3 18967087 SNP-3.18965846. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Cca|p.Ala382Pro/c.1144T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. | |
| 2514 3 18967396 SNP-3.18966155. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaA/aaC|p.Lys297Asn/c.891T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2515 3 18967417 SNP-3.18966176. A G . . PR;EFF=synonymous_variant(LOW||aaC/aaC|p.Asn290Asn/c.870T>C|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 | |
| 2516 3 18968191 SNP-3.18966950. C A . . PR;EFF=synonymous_variant(LOW||aTa/aTa|p.Ile92Ile/c.275G>T|645|LOC_Os03g33160|protein_coding|CODING|LOC_Os03g33160.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2517 3 18986724 SNP-3.18985483. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2518 3 18987135 SNP-3.18985894. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Aga/Tga|p.Arg409*/c.1225G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 | |
| 2519 3 18988598 SNP-3.18987357. C A . . PR;EFF=splice_region_variant(LOW|||c.821G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW||gTc/gTc|p.Val274Val/c.821G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2520 3 18988892 SNP-3.18987651. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His176Leu/c.527G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2521 3 18988967 SNP-3.18987726. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tTg|p.Trp151Leu/c.452G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1) GT ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 | |
| 2522 3 18988984 SNP-3.18987743. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcC/tcT|p.Ser145Ser/c.435G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2523 3 18989003 SNP-3.18987762. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gTg|p.Ala139Val/c.416G>T|531|LOC_Os03g33190|protein_coding|CODING|LOC_Os03g33190.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 | |
| 2524 3 18989771 SNP-3.18988530. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2525 3 18990208 SNP-3.18988967. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tTc|p.Tyr228Phe/c.683G>T|236|LOC_Os03g33200|protein_coding|CODING|LOC_Os03g33200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2526 3 18990589 SNP-3.18989348. C A . . PR;EFF=synonymous_variant(LOW||gTa/gTa|p.Val101Val/c.302G>T|236|LOC_Os03g33200|protein_coding|CODING|LOC_Os03g33200.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2527 3 18991158 SNP-3.18989917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2528 3 18993950 SNP-3.18992709. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2529 3 18994468 SNP-3.18993227. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCc/aAc|p.Thr108Asn/c.323C>A|736|LOC_Os03g33220|protein_coding|CODING|LOC_Os03g33220.1|1|1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2530 3 19000902 SNP-3.18999661. C A . . PR;EFF=synonymous_variant(LOW|SILENT|Ctg/Ttg|p.Leu905Leu/c.2713G>T|1631|LOC_Os03g33230|protein_coding|CODING|LOC_Os03g33230.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. | |
| 2531 3 19011011 SNP-3.19009770. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2532 3 19015538 SNP-3.19014297. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2533 3 19016872 SNP-3.19015631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2534 3 19017621 SNP-3.19016380. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe82Leu/c.246C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2535 3 19018686 SNP-3.19017445. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Att/Gtt|p.Ile358Val/c.1072A>G|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2536 3 19018989 SNP-3.19017748. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ccg/Acg|p.Pro459Thr/c.1375C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2537 3 19019053 SNP-3.19017812. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCt/cAt|p.Pro480His/c.1439C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2538 3 19019327 SNP-3.19018086. C A . . PR;EFF=synonymous_variant(LOW||ctA/ctA|p.Leu571Leu/c.1713C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2539 3 19019901 SNP-3.19018660. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Aca|p.Pro698Thr/c.2092C>A|777|LOC_Os03g33240|protein_coding|CODING|LOC_Os03g33240.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2540 3 19020214 SNP-3.19018973. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 2541 3 19021018 SNP-3.19019777. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtA/gtT|p.Val832Val/c.2496G>T|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 | |
| 2542 3 19021276 SNP-3.19020035. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttC|p.Leu746Phe/c.2238T>C|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 | |
| 2543 3 19022831 SNP-3.19021590. C A . . PR;EFF=synonymous_variant(LOW||ttT/ttT|p.Phe272Phe/c.816G>T|839|LOC_Os03g33250|protein_coding|CODING|LOC_Os03g33250.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2544 3 19029066 SNP-3.19027825. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Cca|p.Ser223Pro/c.667T>C|600|LOC_Os03g33260|protein_coding|CODING|LOC_Os03g33260.1|1|1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 | |
| 2545 3 19033441 SNP-3.19032200. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2546 3 19033520 SNP-3.19032279. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. | |
| 2547 3 19034694 SNP-3.19033453. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cTg/cGg|p.Leu95Arg/c.284A>G|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 | |
| 2548 3 19034859 SNP-3.19033618. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tTc/tAc|p.Phe150Tyr/c.449C>A|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2549 3 19038189 SNP-3.19036948. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctG|p.Leu1058Leu/c.3174A>G|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2550 3 19038303 SNP-3.19037062. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro1096Pro/c.3288C>A|1132|LOC_Os03g33280|protein_coding|CODING|LOC_Os03g33280.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2551 3 19039014 SNP-3.19037773. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2552 3 19041315 SNP-3.19040074. C A . . PR;EFF=intron_variant(MODIFIER|||c.1120-124G>T|651|LOC_Os03g33290|protein_coding|CODING|LOC_Os03g33290.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2553 3 19043574 SNP-3.19042333. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTg/aAg|p.Met29Lys/c.86C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2554 3 19044516 SNP-3.19043275. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acG|p.Thr256Thr/c.768A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2555 3 19045129 SNP-3.19043888. C A . . PR;EFF=intron_variant(MODIFIER|||c.836+545C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2556 3 19046131 SNP-3.19044890. A G . . PR;EFF=intron_variant(MODIFIER|||c.837-65A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|3|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2557 3 19046856 SNP-3.19045615. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|taC/taA|p.Tyr449*/c.1347C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1);LOF=(LOC_Os03g33300|LOC_Os03g33300|1|1.00);NMD=(LOC_Os03g33300|LOC_Os03g33300|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2558 3 19046904 SNP-3.19045663. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val465Val/c.1395A>G|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 | |
| 2559 3 19046950 SNP-3.19045709. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gcc/Acc|p.Ala481Thr/c.1441C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2560 3 19049058 SNP-3.19047817. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gca/Aca|p.Ala689Thr/c.2065C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2561 3 19049571 SNP-3.19048330. C A . . PR;EFF=synonymous_variant(LOW||Ata/Ata|p.Ile860Ile/c.2578C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2562 3 19050988 SNP-3.19049747. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgg/Agg|p.Trp1116Arg/c.3346C>A|1187|LOC_Os03g33300|protein_coding|CODING|LOC_Os03g33300.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2563 3 19052901 SNP-3.19051660. C A . . PR;EFF=synonymous_variant(LOW||cAa/cAa|p.Gln154Gln/c.461C>A|215|LOC_Os03g33310|protein_coding|CODING|LOC_Os03g33310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2564 3 19053056 SNP-3.19051815. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly206Gly/c.616A>G|215|LOC_Os03g33310|protein_coding|CODING|LOC_Os03g33310.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2565 3 19062082 SNP-3.19060841. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgt/Agt|p.Cys716Ser/c.2146C>A|1031|LOC_Os03g33328|protein_coding|CODING|LOC_Os03g33328.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2566 3 19065499 SNP-3.19064258. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2567 3 19065690 SNP-3.19064449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2568 3 19076909 SNP-3.19075668. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCg/aAg|p.Thr360Lys/c.1079C>A|442|LOC_Os03g33360|protein_coding|CODING|LOC_Os03g33360.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2569 3 19077956 SNP-3.19076715. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 2570 3 19079194 SNP-3.19077953. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Ggc|p.Arg6Gly/c.16A>G|415|LOC_Os03g33370|protein_coding|CODING|LOC_Os03g33370.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 | |
| 2571 3 19085363 SNP-3.19084122. A G . . PR;EFF=intron_variant(MODIFIER|||c.226+776A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2572 3 19086741 SNP-3.19085500. A G . . PR;EFF=intron_variant(MODIFIER|||c.227-226A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|1|1) GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 | |
| 2573 3 19087267 SNP-3.19086026. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cGt|p.His176Arg/c.527A>G|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2574 3 19087338 SNP-3.19086097. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Atg|p.Leu200Met/c.598C>A|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1) GT 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 | |
| 2575 3 19087621 SNP-3.19086380. C A . . PR;EFF=synonymous_variant(LOW||aAc/aAc|p.Asn294Asn/c.881C>A|300|LOC_Os03g33380|protein_coding|CODING|LOC_Os03g33380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 | |
| 2576 3 19089509 SNP-3.19088268. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. | |
| 2577 3 19092918 SNP-3.19091677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2578 3 19095009 SNP-3.19093768. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2579 3 19096319 SNP-3.19095078. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2580 3 19097885 SNP-3.19096644. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gga/Cga|p.Gly70Arg/c.208T>C|198|LOC_Os03g33400|protein_coding|CODING|LOC_Os03g33400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. | |
| 2581 3 19097980 SNP-3.19096739. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gCa|p.Gly38Ala/c.113T>C|198|LOC_Os03g33400|protein_coding|CODING|LOC_Os03g33400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 | |
| 2582 3 19103719 SNP-3.19102478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 | |
| 2583 3 19104084 SNP-3.19102843. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. | |
| 2584 3 19104548 SNP-3.19103307. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu44Leu/c.132C>A|190|LOC_Os03g33430|protein_coding|CODING|LOC_Os03g33430.1|1|1) GT ./. 1/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2585 3 19105632 SNP-3.19104391. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2586 3 19107776 SNP-3.19106535. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2587 3 19107792 SNP-3.19106551. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2588 3 19110031 SNP-3.19108790. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 | |
| 2589 3 19111719 SNP-3.19110478. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2590 3 19112213 SNP-3.19110972. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 | |
| 2591 3 19113142 SNP-3.19111901. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.293C>A|147|LOC_Os03g33450|protein_coding|CODING|LOC_Os03g33450.1|3|1),intron_variant(MODIFIER|||c.293-1C>A|147|LOC_Os03g33450|protein_coding|CODING|LOC_Os03g33450.1|2|1);LOF=(LOC_Os03g33450|LOC_Os03g33450|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2592 3 19113904 SNP-3.19112663. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2593 3 19114865 SNP-3.19113624. C A . . PR;EFF=splice_region_variant(LOW|||c.873G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|6|1),intron_variant(MODIFIER|||c.873-7G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|6|1) GT 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2594 3 19116045 SNP-3.19114804. C A . . PR;EFF=synonymous_variant(LOW||aTg/aTg|p.Met229Met/c.686G>T|487|LOC_Os03g33460|protein_coding|CODING|LOC_Os03g33460.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2595 3 19119983 SNP-3.19118742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 | |
| 2596 3 19120835 SNP-3.19119594. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2597 3 19120968 SNP-3.19119727. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 | |
| 2598 3 19123027 SNP-3.19121786. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 | |
| 2599 3 19123074 SNP-3.19121833. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 | |
| 2600 3 19124647 SNP-3.19123406. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 2601 3 19125149 SNP-3.19123908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2602 3 19127054 SNP-3.19125813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. | |
| 2603 3 19127791 SNP-3.19126550. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ctg/Gtg|p.Leu134Val/c.400A>G|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 | |
| 2604 3 19127952 SNP-3.19126711. A G . . PR;EFF=stop_gained(HIGH|NONSENSE|taT/taG|p.Tyr187*/c.561A>G|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2605 3 19128108 SNP-3.19126867. C A . . PR;EFF=synonymous_variant(LOW||aaA/aaA|p.Lys239Lys/c.717C>A|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2606 3 19128197 SNP-3.19126956. C A . . PR;EFF=stop_retained_variant(LOW||tAg/tAg|p.Ter269Ter/c.806C>A|268|LOC_Os03g33480|protein_coding|CODING|LOC_Os03g33480.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2607 3 19128237 SNP-3.19126996. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 | |
| 2608 3 19128315 SNP-3.19127074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2609 3 19129577 SNP-3.19128336. C A . . PR;EFF=splice_region_variant(LOW|||c.201G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),synonymous_variant(LOW|SILENT|acA/acT|p.Thr67Thr/c.201G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 | |
| 2610 3 19129604 SNP-3.19128363. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctT|p.Leu58Leu/c.174G>T|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/0 | |
| 2611 3 19129676 SNP-3.19128435. A G . . PR;EFF=synonymous_variant(LOW||ctC/ctC|p.Leu34Leu/c.102T>C|118|LOC_Os03g33490|protein_coding|CODING|LOC_Os03g33490.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2612 3 19130100 SNP-3.19128859. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2613 3 19130299 SNP-3.19129058. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2614 3 19133639 SNP-3.19132398. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 | |
| 2615 3 19136653 SNP-3.19135412. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2616 3 19136855 SNP-3.19135614. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2617 3 19137832 SNP-3.19136591. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2618 3 19138983 SNP-3.19137742. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2619 3 19139036 SNP-3.19137795. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. | |
| 2620 3 19139491 SNP-3.19138250. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 | |
| 2621 3 19142199 SNP-3.19140958. C A . . PR;EFF=intron_variant(MODIFIER|||c.406+192G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2622 3 19142346 SNP-3.19141105. C A . . PR;EFF=intron_variant(MODIFIER|||c.406+45G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2623 3 19142467 SNP-3.19141226. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccA/ccT|p.Pro110Pro/c.330G>T|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2624 3 19142663 SNP-3.19141422. A G . . PR;EFF=synonymous_variant(LOW||aCa/aCa|p.Thr45Thr/c.134T>C|746|LOC_Os03g33500|protein_coding|CODING|LOC_Os03g33500.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 | |
| 2625 3 19144676 SNP-3.19143435. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2626 3 19145269 SNP-3.19144028. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCg/gAg|p.Ala37Glu/c.110C>A|50|LOC_Os03g33509|protein_coding|CODING|LOC_Os03g33509.1|1|1),splice_region_variant(LOW|||c.110C>A|50|LOC_Os03g33509|protein_coding|CODING|LOC_Os03g33509.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2627 3 19145523 SNP-3.19144282. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 | |
| 2628 3 19146331 SNP-3.19145090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2629 3 19149086 SNP-3.19147845. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 | |
| 2630 3 19149479 SNP-3.19148238. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 | |
| 2631 3 19149706 SNP-3.19148465. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 | |
| 2632 3 19151296 SNP-3.19150055. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2633 3 19156140 SNP-3.19154899. A G . . PR;EFF=synonymous_variant(LOW|SILENT|caT/caC|p.His1399His/c.4197T>C|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|3|1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2634 3 19158048 SNP-3.19156807. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro812Ser/c.2434G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2635 3 19158432 SNP-3.19157191. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.2052G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|2|1),intron_variant(MODIFIER|||c.2052-2G>T|2027|LOC_Os03g33530|protein_coding|CODING|LOC_Os03g33530.1|1|1);LOF=(LOC_Os03g33530|LOC_Os03g33530|1|1.00) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2636 3 19165258 SNP-3.19164017. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 | |
| 2637 3 19165316 SNP-3.19164075. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 | |
| 2638 3 19169014 SNP-3.19167773. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. | |
| 2639 3 19172308 SNP-3.19171067. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. | |
| 2640 3 19177904 SNP-3.19176663. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 | |
| 2641 3 19178113 SNP-3.19176872. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 | |
| 2642 3 19178400 SNP-3.19177159. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 | |
| 2643 3 19178485 SNP-3.19177244. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2644 3 19178506 SNP-3.19177265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 | |
| 2645 3 19181841 SNP-3.19180600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2646 3 19181864 SNP-3.19180623. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 | |
| 2647 3 19193977 SNP-3.19192736. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 | |
| 2648 3 19194196 SNP-3.19192955. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2649 3 19194737 SNP-3.19193496. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2650 3 19198829 SNP-3.19197588. A G . . PR;EFF=intron_variant(MODIFIER|||c.1222-611T>C|448|LOC_Os03g33590|protein_coding|CODING|LOC_Os03g33590.1|11|1),intron_variant(MODIFIER|||c.1222-611T>C|440|LOC_Os03g33590|protein_coding|CODING|LOC_Os03g33590.2|11|1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2651 3 19204549 SNP-3.19203308. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2652 3 19207080 SNP-3.19205839. C A . . PR;EFF=intron_variant(MODIFIER|||c.219-95G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 | |
| 2653 3 19207198 SNP-3.19205957. A G . . PR;EFF=intron_variant(MODIFIER|||c.219-213T>C|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT ./. 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 2654 3 19207283 SNP-3.19206042. C A . . PR;EFF=intron_variant(MODIFIER|||c.219-298G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2655 3 19207843 SNP-3.19206602. C A . . PR;EFF=intron_variant(MODIFIER|||c.218+338G>T|308|LOC_Os03g33600|protein_coding|CODING|LOC_Os03g33600.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2656 3 19210587 SNP-3.19209346. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2657 3 19213861 SNP-3.19212620. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 1/1 | |
| 2658 3 19214991 SNP-3.19213750. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 | |
| 2659 3 19217756 SNP-3.19216515. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2660 3 19217918 SNP-3.19216677. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2661 3 19218405 SNP-3.19217164. C A . . PR;EFF=stop_lost(HIGH|MISSENSE|tAg/tTg|p.Ter122Leuext*?/c.365G>T|121|LOC_Os03g33620|protein_coding|CODING|LOC_Os03g33620.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2662 3 19218540 SNP-3.19217299. C A . . PR;EFF=synonymous_variant(LOW||aTg/aTg|p.Met77Met/c.230G>T|121|LOC_Os03g33620|protein_coding|CODING|LOC_Os03g33620.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2663 3 19222783 SNP-3.19221542. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2664 3 19223361 SNP-3.19222120. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. | |
| 2665 3 19225307 SNP-3.19224066. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2666 3 19238836 SNP-3.19237595. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2667 3 19238905 SNP-3.19237664. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2668 3 19241250 SNP-3.19240009. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2669 3 19243170 SNP-3.19241929. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 | |
| 2670 3 19243554 SNP-3.19242313. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2671 3 19246770 SNP-3.19245529. A G . . PR;EFF=synonymous_variant(LOW||tcG/tcG|p.Ser585Ser/c.1755A>G|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2672 3 19247694 SNP-3.19246453. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ccG/ccA|p.Pro893Pro/c.2679C>A|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2673 3 19247862 SNP-3.19246621. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu949Leu/c.2847C>A|1048|LOC_Os03g33650|protein_coding|CODING|LOC_Os03g33650.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2674 3 19248594 SNP-3.19247353. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2675 3 19248842 SNP-3.19247601. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2676 3 19248864 SNP-3.19247623. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2677 3 19248886 SNP-3.19247645. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2678 3 19251900 SNP-3.19250659. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 | |
| 2679 3 19251932 SNP-3.19250691. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 | |
| 2680 3 19252276 SNP-3.19251035. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 | |
| 2681 3 19253417 SNP-3.19252176. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 | |
| 2682 3 19256045 SNP-3.19254804. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2683 3 19257814 SNP-3.19256573. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTt/gGt|p.Val15Gly/c.44A>G|356|LOC_Os03g33670|protein_coding|CODING|LOC_Os03g33670.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2684 3 19258481 SNP-3.19257240. C A . . PR;EFF=intron_variant(MODIFIER|||c.626-50C>A|356|LOC_Os03g33670|protein_coding|CODING|LOC_Os03g33670.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2685 3 19264529 SNP-3.19263288. A G . . PR;EFF=intron_variant(MODIFIER|||c.1340+59A>G|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|4|1) GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2686 3 19265090 SNP-3.19263849. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctG/ctA|p.Leu573Leu/c.1719C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2687 3 19266201 SNP-3.19264960. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp905Glu/c.2715A>G|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. ./. ./. 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2688 3 19266413 SNP-3.19265172. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val976Glu/c.2927C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2689 3 19266618 SNP-3.19265377. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ggT/ggA|p.Gly1044Gly/c.3132C>A|1149|LOC_Os03g33680|protein_coding|CODING|LOC_Os03g33680.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2690 3 19271202 SNP-3.19269961. C A . . PR;EFF=splice_region_variant(LOW|||c.2116C>A|749|LOC_Os03g33690|protein_coding|CODING|LOC_Os03g33690.1|6|1),synonymous_variant(LOW|SILENT|Cgg/Agg|p.Arg706Arg/c.2116C>A|749|LOC_Os03g33690|protein_coding|CODING|LOC_Os03g33690.1|6|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 2691 3 19273141 SNP-3.19271900. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu365Leu/c.1095G>T|606|LOC_Os03g33700|protein_coding|CODING|LOC_Os03g33700.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 2692 3 19281719 SNP-3.19280478. C A . . PR;EFF=intron_variant(MODIFIER|||c.51+15G>T|699|LOC_Os03g33730|protein_coding|CODING|LOC_Os03g33730.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 | |
| 2693 3 19282070 SNP-3.19280829. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 | |
| 2694 3 19283750 SNP-3.19282509. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2695 3 19284115 SNP-3.19282874. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2696 3 19284183 SNP-3.19282942. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 | |
| 2697 3 19284232 SNP-3.19282991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 2698 3 19287495 SNP-3.19286254. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly6Glu/c.17C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),splice_region_variant(LOW|||c.17C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2699 3 19287814 SNP-3.19286573. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys73Lys/c.217C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2700 3 19288045 SNP-3.19286804. C A . . PR;EFF=synonymous_variant(LOW||Agt/Agt|p.Ser150Ser/c.448C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2701 3 19288594 SNP-3.19287353. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cCg/cAg|p.Pro275Gln/c.824C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|3|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2702 3 19289149 SNP-3.19287908. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aCa/aAa|p.Thr434Lys/c.1301C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 | |
| 2703 3 19289418 SNP-3.19288177. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cat/Aat|p.His524Asn/c.1570C>A|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|4|1) GT 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 | |
| 2704 3 19289684 SNP-3.19288443. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aaT/aaG|p.Asn560Lys/c.1680A>G|726|LOC_Os03g33740|protein_coding|CODING|LOC_Os03g33740.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. | |
| 2705 3 19292046 SNP-3.19290805. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2706 3 19294696 SNP-3.19293206. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tAt|p.Ser119Tyr/c.356C>A|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|2|1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2707 3 19295568 SNP-3.19294078. C A . . PR;EFF=intron_variant(MODIFIER|||c.876+352C>A|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|2|1) GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. | |
| 2708 3 19296252 SNP-3.19294762. A G . . PR;EFF=splice_donor_variant(HIGH|||c.910A>G|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|3|1),intron_variant(MODIFIER|||c.909+1A>G|353|LOC_Os03g33750|protein_coding|CODING|LOC_Os03g33750.1|3|1);LOF=(LOC_Os03g33750|LOC_Os03g33750|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2709 3 19296949 SNP-3.19295459. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2710 3 19297394 SNP-3.19295904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2711 3 19301555 SNP-3.19300065. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTa/gAa|p.Val773Glu/c.2318C>A|1535|LOC_Os03g33760|protein_coding|CODING|LOC_Os03g33760.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2712 3 19302439 SNP-3.19300949. C A . . PR;EFF=synonymous_variant(LOW||Aag/Aag|p.Lys989Lys/c.2965C>A|1535|LOC_Os03g33760|protein_coding|CODING|LOC_Os03g33760.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2713 3 19309647 SNP-3.19308157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 | |
| 2714 3 19315968 SNP-3.19314478. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tgc/Agc|p.Cys170Ser/c.508C>A|282|LOC_Os03g33790|protein_coding|CODING|LOC_Os03g33790.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2715 3 19316683 SNP-3.19315193. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2716 3 19317266 SNP-3.19315776. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 2717 3 19317544 SNP-3.19316054. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2718 3 19318627 SNP-3.19317137. C A . . PR;EFF=intron_variant(MODIFIER|||c.343+98G>T|122|LOC_Os03g33800|protein_coding|CODING|LOC_Os03g33800.1|1|1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 2719 3 19318755 SNP-3.19317265. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Cca|p.Thr105Pro/c.313T>C|122|LOC_Os03g33800|protein_coding|CODING|LOC_Os03g33800.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2720 3 19321635 SNP-3.19320145. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|caA/caT|p.Gln135His/c.405G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2721 3 19321748 SNP-3.19320258. C A . . PR;EFF=synonymous_variant(LOW||Tgc/Tgc|p.Cys98Cys/c.292G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 | |
| 2722 3 19321768 SNP-3.19320278. C A . . PR;EFF=synonymous_variant(LOW||gTt/gTt|p.Val91Val/c.272G>T|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2723 3 19321908 SNP-3.19320418. A G . . PR;EFF=synonymous_variant(LOW||atC/atC|p.Ile44Ile/c.132T>C|546|LOC_Os03g33810|protein_coding|CODING|LOC_Os03g33810.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 2724 3 19322247 SNP-3.19320757. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2725 3 19323330 SNP-3.19321840. C A . . PR;EFF=stop_retained_variant(LOW||Taa/Taa|p.Ter901Ter/c.2701G>T|900|LOC_Os03g33819|protein_coding|CODING|LOC_Os03g33819.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2726 3 19325067 SNP-3.19323577. A G . . PR;EFF=synonymous_variant(LOW||gCa/gCa|p.Ala337Ala/c.1010T>C|900|LOC_Os03g33819|protein_coding|CODING|LOC_Os03g33819.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 | |
| 2727 3 19330460 SNP-3.19328970. A G . . PR;EFF=intron_variant(MODIFIER|||c.763-124T>C|483|LOC_Os03g33828|protein_coding|CODING|LOC_Os03g33828.1|3|1) GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 | |
| 2728 3 19339191 SNP-3.19337701. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 | |
| 2729 3 19340848 SNP-3.19339358. C A . . PR;EFF=synonymous_variant(LOW||cAt/cAt|p.His43His/c.128C>A|380|LOC_Os03g33860|protein_coding|CODING|LOC_Os03g33860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2730 3 19341601 SNP-3.19340111. A G . . PR;EFF=synonymous_variant(LOW||cGc/cGc|p.Arg294Arg/c.881A>G|380|LOC_Os03g33860|protein_coding|CODING|LOC_Os03g33860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 | |
| 2731 3 19350828 SNP-3.19349338. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gct/Cct|p.Ala199Pro/c.595T>C|240|LOC_Os03g33890|protein_coding|CODING|LOC_Os03g33890.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 | |
| 2732 3 19351341 SNP-3.19349851. C A . . PR;EFF=intron_variant(MODIFIER|||c.158-76G>T|240|LOC_Os03g33890|protein_coding|CODING|LOC_Os03g33890.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2733 3 19352903 SNP-3.19351413. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2734 3 19353261 SNP-3.19351771. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Cga/Tga|p.Arg364*/c.1090G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. | |
| 2735 3 19354321 SNP-3.19352831. C A . . PR;EFF=synonymous_variant(LOW||gaT/gaT|p.Asp170Asp/c.510G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2736 3 19354906 SNP-3.19353416. C A . . PR;EFF=intron_variant(MODIFIER|||c.292-26G>T|475|LOC_Os03g33900|protein_coding|CODING|LOC_Os03g33900.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 | |
| 2737 3 19356291 SNP-3.19354801. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2738 3 19365137 SNP-3.19363647. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2739 3 19365516 SNP-3.19364026. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2740 3 19365823 SNP-3.19364333. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2741 3 19366033 SNP-3.19364543. A G . . PR;EFF=synonymous_variant(LOW||gtC/gtC|p.Val250Val/c.750T>C|278|LOC_Os03g33930|protein_coding|CODING|LOC_Os03g33930.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2742 3 19367600 SNP-3.19366110. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2743 3 19368394 SNP-3.19366904. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2744 3 19368681 SNP-3.19367191. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Tac|p.Asn1039Tyr/c.3115G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 | |
| 2745 3 19368705 SNP-3.19367215. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gaa/Taa|p.Glu1031*/c.3091G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1) GT ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2746 3 19369044 SNP-3.19367554. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgg/Tgg|p.Arg918Trp/c.2752G>T|1115|LOC_Os03g33940|protein_coding|CODING|LOC_Os03g33940.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2747 3 19376452 SNP-3.19374962. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 | |
| 2748 3 19382095 SNP-3.19380605. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2749 3 19390968 SNP-3.19389478. A G . . PR;EFF=intron_variant(MODIFIER|||c.187+961A>G|88|LOC_Os03g33980|protein_coding|CODING|LOC_Os03g33980.1|1|1) GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. | |
| 2750 3 19404735 SNP-3.19403245. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2751 3 19404760 SNP-3.19403270. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2752 3 19405421 SNP-3.19403931. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2753 3 19407854 SNP-3.19406364. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 | |
| 2754 3 19408391 SNP-3.19406901. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg47Arg/c.140A>G|190|LOC_Os03g34020|protein_coding|CODING|LOC_Os03g34020.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2755 3 19409064 SNP-3.19407574. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2756 3 19409221 SNP-3.19407731. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2757 3 19412162 SNP-3.19410672. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2758 3 19414835 SNP-3.19413345. C A . . PR;EFF=intron_variant(MODIFIER|||c.732-1306G>T|326|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.1|1|1),intron_variant(MODIFIER|||c.615-1306G>T|287|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.2|2|1),intron_variant(MODIFIER|||c.732-466G>T|272|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.3|1|1) GT 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 | |
| 2759 3 19415864 SNP-3.19414374. A G . . PR;EFF=intron_variant(MODIFIER|||c.731+444T>C|326|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.1|1|1),intron_variant(MODIFIER|||c.614+444T>C|287|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.2|2|1),intron_variant(MODIFIER|||c.731+444T>C|272|LOC_Os03g34040|protein_coding|CODING|LOC_Os03g34040.3|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2760 3 19417157 SNP-3.19415667. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2761 3 19417344 SNP-3.19415854. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 | |
| 2762 3 19420407 SNP-3.19418917. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2763 3 19422085 SNP-3.19420595. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaG|p.Asp193Glu/c.579A>G|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2764 3 19422174 SNP-3.19420684. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.616C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|3|1),intron_variant(MODIFIER|||c.616-2C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|2|1);LOF=(LOC_Os03g34070|LOC_Os03g34070|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 | |
| 2765 3 19422218 SNP-3.19420728. C A . . PR;EFF=synonymous_variant(LOW||Aac/Aac|p.Asn220Asn/c.658C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2766 3 19422797 SNP-3.19421307. C A . . PR;EFF=intron_variant(MODIFIER|||c.934+146C>A|404|LOC_Os03g34070|protein_coding|CODING|LOC_Os03g34070.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2767 3 19425823 SNP-3.19424333. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2768 3 19425921 SNP-3.19424431. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. | |
| 2769 3 19426001 SNP-3.19424511. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2770 3 19426360 SNP-3.19424870. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2771 3 19426735 SNP-3.19425245. C A . . PR;EFF=synonymous_variant(LOW|SILENT|tcT/tcA|p.Ser35Ser/c.105C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2772 3 19426905 SNP-3.19425415. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGg/aAg|p.Arg92Lys/c.275C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2773 3 19427164 SNP-3.19425674. A G . . PR;EFF=synonymous_variant(LOW||ccG/ccG|p.Pro178Pro/c.534A>G|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2774 3 19427190 SNP-3.19425700. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cAt|p.Arg187His/c.560C>A|235|LOC_Os03g34090|protein_coding|CODING|LOC_Os03g34090.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 | |
| 2775 3 19432253 SNP-3.19430763. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. | |
| 2776 3 19434788 SNP-3.19433298. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2777 3 19435700 SNP-3.19434210. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2778 3 19435878 SNP-3.19434388. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2779 3 19436097 SNP-3.19434607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2780 3 19437591 SNP-3.19436101. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2781 3 19439640 SNP-3.19438150. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2782 3 19448247 SNP-3.19446757. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAc/cTc|p.His30Leu/c.89G>T|404|LOC_Os03g34140|protein_coding|CODING|LOC_Os03g34140.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2783 3 19450614 SNP-3.19449124. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 1/1 | |
| 2784 3 19452826 SNP-3.19451336. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcA|p.Ala127Ala/c.381C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 | |
| 2785 3 19452836 SNP-3.19451346. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val131Ile/c.391C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2786 3 19453291 SNP-3.19451801. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp282Glu/c.846C>A|314|LOC_Os03g34150|protein_coding|CODING|LOC_Os03g34150.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2787 3 19453506 SNP-3.19452016. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2788 3 19454317 SNP-3.19452827. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2789 3 19454570 SNP-3.19453080. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|tGg/tCg|p.Trp70Ser/c.209T>C|80|LOC_Os03g34160|protein_coding|CODING|LOC_Os03g34160.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2790 3 19458144 SNP-3.19456654. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gga/Tga|p.Gly360*/c.1078G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2791 3 19458371 SNP-3.19456881. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.853G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|2|1),intron_variant(MODIFIER|||c.853-2G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1);LOF=(LOC_Os03g34170|LOC_Os03g34170|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2792 3 19459022 SNP-3.19457532. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGc/aCc|p.Ser283Thr/c.848T>C|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 | |
| 2793 3 19459428 SNP-3.19457938. C A . . PR;EFF=synonymous_variant(LOW||Tat/Tat|p.Tyr148Tyr/c.442G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2794 3 19459557 SNP-3.19458067. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Ctc|p.Val105Leu/c.313T>C|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 | |
| 2795 3 19459649 SNP-3.19458159. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile74Ile/c.221G>T|388|LOC_Os03g34170|protein_coding|CODING|LOC_Os03g34170.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2796 3 19460831 SNP-3.19459341. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2797 3 19461049 SNP-3.19459559. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2798 3 19462836 SNP-3.19461346. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaG/aaA|p.Lys181Lys/c.543C>A|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2799 3 19463025 SNP-3.19461535. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttT/ttA|p.Phe244Leu/c.732C>A|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2800 3 19463104 SNP-3.19461614. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aag/Gag|p.Lys271Glu/c.811A>G|285|LOC_Os03g34180|protein_coding|CODING|LOC_Os03g34180.1|5|1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2801 3 19476117 SNP-3.19474627. C A . . PR;EFF=intron_variant(MODIFIER|||c.436+118C>A|313|LOC_Os03g34200|protein_coding|CODING|LOC_Os03g34200.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2802 3 19477391 SNP-3.19475901. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2803 3 19478609 SNP-3.19477119. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2804 3 19480097 SNP-3.19478607. C A . . PR;EFF=intron_variant(MODIFIER|||c.355+468C>A|401|LOC_Os03g34210|protein_coding|CODING|LOC_Os03g34210.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 2805 3 19482708 SNP-3.19481218. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 | |
| 2806 3 19483515 SNP-3.19482025. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2807 3 19483872 SNP-3.19482382. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2808 3 19483955 SNP-3.19482465. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 | |
| 2809 3 19484593 SNP-3.19483103. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2810 3 19485735 SNP-3.19484245. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2811 3 19486781 SNP-3.19485291. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2812 3 19488301 SNP-3.19486811. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2813 3 19488438 SNP-3.19486948. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2814 3 19488488 SNP-3.19486998. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2815 3 19490479 SNP-3.19488989. C A . . PR;EFF=intron_variant(MODIFIER|||c.240+14G>T|433|LOC_Os03g34220|protein_coding|CODING|LOC_Os03g34220.1|2|1) GT ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2816 3 19491182 SNP-3.19489692. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 | |
| 2817 3 19491464 SNP-3.19489974. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2818 3 19491625 SNP-3.19490135. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 | |
| 2819 3 19497929 SNP-3.19496439. C A . . PR;EFF=intron_variant(MODIFIER|||c.2070+30C>A|908|LOC_Os03g34240|protein_coding|CODING|LOC_Os03g34240.1|1|1) GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 | |
| 2820 3 19508441 SNP-3.19506951. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgc/Tgc|p.Arg527Cys/c.1579G>T|931|LOC_Os03g34270|protein_coding|CODING|LOC_Os03g34270.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2821 3 19511582 SNP-3.19510092. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 | |
| 2822 3 19516921 SNP-3.19515431. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu89*/c.265G>T|176|LOC_Os03g34290|protein_coding|CODING|LOC_Os03g34290.1|2|1),splice_region_variant(LOW|||c.265G>T|176|LOC_Os03g34290|protein_coding|CODING|LOC_Os03g34290.1|2|1);LOF=(LOC_Os03g34290|LOC_Os03g34290|1|1.00);NMD=(LOC_Os03g34290|LOC_Os03g34290|1|1.00) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 | |
| 2823 3 19517647 SNP-3.19516157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 | |
| 2824 3 19517760 SNP-3.19516270. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2825 3 19518179 SNP-3.19516689. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. | |
| 2826 3 19518782 SNP-3.19517292. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2827 3 19525732 SNP-3.19524242. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ata/Tta|p.Ile44Leu/c.130G>T|417|LOC_Os03g34300|protein_coding|CODING|LOC_Os03g34300.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Ata/Tta|p.Ile44Leu/c.130G>T|372|LOC_Os03g34300|protein_coding|CODING|LOC_Os03g34300.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 2828 3 19526547 SNP-3.19525057. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 | |
| 2829 3 19526749 SNP-3.19525259. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2830 3 19529334 SNP-3.19527844. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||772|c.*772A>G|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||226|c.*226A>G|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.417-61A>G|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|1|1),intron_variant(MODIFIER|||c.417-61A>G|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|1|1),intron_variant(MODIFIER|||c.460-61A>G|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|2|1),intron_variant(MODIFIER|||c.460-61A>G|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|2|1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2831 3 19530150 SNP-3.19528660. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1588|c.*1588C>A|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1),3_prime_UTR_variant(MODIFIER||1042|c.*1042C>A|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1),3_prime_UTR_variant(MODIFIER||629|c.*629C>A|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|2|1),3_prime_UTR_variant(MODIFIER||447|c.*447C>A|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|3|1),3_prime_UTR_variant(MODIFIER||80|c.*80C>A|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|3|1),3_prime_UTR_variant(MODIFIER||39|c.*39C>A|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|4|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2832 3 19530426 SNP-3.19528936. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1864|c.*1864C>A|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),intron_variant(MODIFIER|||c.*549+174C>A|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|3|1),intron_variant(MODIFIER|||c.*141+174C>A|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|4|1),intron_variant(MODIFIER|||c.*731+174C>A|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|2|1),intron_variant(MODIFIER|||c.*1144+174C>A|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|2|1),intron_variant(MODIFIER|||c.*182+174C>A|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|3|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2833 3 19531487 SNP-3.19529997. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||2925|c.*2673A>G|143|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.5|2|1),3_prime_UTR_variant(MODIFIER||1784|c.*1001A>G|255|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.1|6|1),3_prime_UTR_variant(MODIFIER||1376|c.*593A>G|209|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.2|7|1),3_prime_UTR_variant(MODIFIER||1966|c.*1183A>G|180|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.3|5|1),3_prime_UTR_variant(MODIFIER||2379|c.*1596A>G|176|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.4|5|1),3_prime_UTR_variant(MODIFIER||1417|c.*634A>G|181|LOC_Os03g34310|protein_coding|CODING|LOC_Os03g34310.6|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2834 3 19531818 SNP-3.19530328. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2835 3 19532303 SNP-3.19530813. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2836 3 19532340 SNP-3.19530850. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 | |
| 2837 3 19532597 SNP-3.19531107. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 | |
| 2838 3 19536512 SNP-3.19535022. C A . . PR;EFF=intron_variant(MODIFIER|||c.354+12G>T|469|LOC_Os03g34320|protein_coding|CODING|LOC_Os03g34320.1|2|1) GT ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2839 3 19538465 SNP-3.19536975. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2840 3 19543078 SNP-3.19541588. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2841 3 19570108 SNP-3.19568618. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ttC/ttT|p.Phe113Phe/c.339G>T|540|LOC_Os03g35330|protein_coding|CODING|LOC_Os03g35330.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2842 3 19580263 SNP-3.19578773. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 | |
| 2843 3 19580733 SNP-3.19579243. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2844 3 19581039 SNP-3.19579549. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 | |
| 2845 3 19587166 SNP-3.19585676. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cTt|p.Arg1787Leu/c.5360G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|26|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2846 3 19588936 SNP-3.19587446. C A . . PR;EFF=intron_variant(MODIFIER|||c.3954-296G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|24|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2847 3 19595062 SNP-3.19593572. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcG/tcC|p.Ser632Ser/c.1896T>C|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|13|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2848 3 19596740 SNP-3.19595250. C A . . PR;EFF=intron_variant(MODIFIER|||c.1600+87G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|10|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2849 3 19596996 SNP-3.19595506. A G . . PR;EFF=intron_variant(MODIFIER|||c.1559-128T>C|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|9|1) GT 0/0 0/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2850 3 19601864 SNP-3.19600374. C A . . PR;EFF=intron_variant(MODIFIER|||c.360+255G>T|2128|LOC_Os03g35340|protein_coding|CODING|LOC_Os03g35340.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 2851 3 19605197 SNP-3.19603707. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2852 3 19605762 SNP-3.19604272. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2853 3 19606910 SNP-3.19605420. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2854 3 19607249 SNP-3.19605759. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 | |
| 2855 3 19610709 SNP-3.19609219. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2856 3 19611179 SNP-3.19609689. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2857 3 19612474 SNP-3.19610984. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2858 3 19614779 SNP-3.19613289. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2859 3 19615499 SNP-3.19614009. C A . . PR;EFF=intron_variant(MODIFIER|||c.106-49G>T|212|LOC_Os03g35370|protein_coding|CODING|LOC_Os03g35370.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2860 3 19616179 SNP-3.19614689. A G . . PR;EFF=intron_variant(MODIFIER|||c.105+361T>C|212|LOC_Os03g35370|protein_coding|CODING|LOC_Os03g35370.1|1|1) GT 0/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 | |
| 2861 3 19616877 SNP-3.19615387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. | |
| 2862 3 19616878 SNP-3.19615388. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2863 3 19618127 SNP-3.19616637. A G . . PR;EFF=synonymous_variant(LOW||aGc/aGc|p.Ser294Ser/c.881A>G|1028|LOC_Os03g35380|protein_coding|CODING|LOC_Os03g35380.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 | |
| 2864 3 19618567 SNP-3.19617077. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cca/Aca|p.Pro441Thr/c.1321C>A|1028|LOC_Os03g35380|protein_coding|CODING|LOC_Os03g35380.1|2|1) GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 | |
| 2865 3 19623746 SNP-3.19622256. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acG/acT|p.Thr1082Thr/c.3246G>T|1908|LOC_Os03g35390|protein_coding|CODING|LOC_Os03g35390.1|4|1) GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 2866 3 19627672 SNP-3.19626182. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 | |
| 2867 3 19628617 SNP-3.19627127. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 | |
| 2868 3 19629736 SNP-3.19628246. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 | |
| 2869 3 19630493 SNP-3.19629003. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGt/cCt|p.Arg374Pro/c.1121T>C|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2870 3 19630519 SNP-3.19629029. C A . . PR;EFF=synonymous_variant(LOW|SILENT|aaC/aaT|p.Asn365Asn/c.1095G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|8|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2871 3 19630572 SNP-3.19629082. C A . . PR;EFF=splice_region_variant(LOW|||c.1048G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|7|1),intron_variant(MODIFIER|||c.1048-6G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|7|1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 2872 3 19631305 SNP-3.19629815. C A . . PR;EFF=splice_acceptor_variant(HIGH|||c.644G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|5|1),intron_variant(MODIFIER|||c.644-2G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|4|1);LOF=(LOC_Os03g35400|LOC_Os03g35400|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 | |
| 2873 3 19632687 SNP-3.19631197. C A . . PR;EFF=synonymous_variant(LOW|SILENT|atC/atT|p.Ile8Ile/c.24G>T|550|LOC_Os03g35400|protein_coding|CODING|LOC_Os03g35400.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2874 3 19632711 SNP-3.19631221. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2875 3 19636067 SNP-3.19634577. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2876 3 19638983 SNP-3.19637493. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2877 3 19643016 SNP-3.19641526. C A . . PR;EFF=synonymous_variant(LOW||aTc/aTc|p.Ile1357Ile/c.4070G>T|1436|LOC_Os03g35430|protein_coding|CODING|LOC_Os03g35430.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2878 3 19652068 SNP-3.19650578. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 | |
| 2879 3 19654407 SNP-3.19652917. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2880 3 19654713 SNP-3.19653223. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2881 3 19656074 SNP-3.19654584. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr1194Ser/c.3580G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2882 3 19656332 SNP-3.19654842. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ggg/Tgg|p.Gly1108Trp/c.3322G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2883 3 19656379 SNP-3.19654889. C A . . PR;EFF=synonymous_variant(LOW||cTg/cTg|p.Leu1092Leu/c.3275G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|11|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2884 3 19657351 SNP-3.19655861. C A . . PR;EFF=intron_variant(MODIFIER|||c.3028+119G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|10|1) GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. | |
| 2885 3 19664349 SNP-3.19662859. A G . . PR;EFF=intron_variant(MODIFIER|||c.188+926T>C|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2886 3 19665188 SNP-3.19663698. C A . . PR;EFF=intron_variant(MODIFIER|||c.188+87G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. | |
| 2887 3 19665222 SNP-3.19663732. C A . . PR;EFF=intron_variant(MODIFIER|||c.188+53G>T|1210|LOC_Os03g35454|protein_coding|CODING|LOC_Os03g35454.1|1|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2888 3 19667063 SNP-3.19665573. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 | |
| 2889 3 19667335 SNP-3.19665845. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2890 3 19667669 SNP-3.19666179. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|tCg/tAg|p.Ser34*/c.101C>A|126|LOC_Os03g35470|protein_coding|CODING|LOC_Os03g35470.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 | |
| 2891 3 19668515 SNP-3.19667025. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 | |
| 2892 3 19671820 SNP-3.19670330. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|atC/atG|p.Ile604Met/c.1812A>G|697|LOC_Os03g35480|protein_coding|CODING|LOC_Os03g35480.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 | |
| 2893 3 19672105 SNP-3.19670615. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 | |
| 2894 3 19672425 SNP-3.19670935. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 | |
| 2895 3 19672940 SNP-3.19671450. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2896 3 19680398 SNP-3.19678908. A G . . PR;EFF=synonymous_variant(LOW||Ggt/Ggt|p.Gly125Gly/c.373A>G|159|LOC_Os03g35500|protein_coding|CODING|LOC_Os03g35500.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2897 3 19684618 SNP-3.19683128. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 | |
| 2898 3 19684739 SNP-3.19683249. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2899 3 19686461 SNP-3.19684971. C A . . PR;EFF=intron_variant(MODIFIER|||c.106-156C>A|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2900 3 19686821 SNP-3.19685331. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cag/Gag|p.Gln104Glu/c.310A>G|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 | |
| 2901 3 19686986 SNP-3.19685496. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gtc/Atc|p.Val159Ile/c.475C>A|159|LOC_Os03g35520|protein_coding|CODING|LOC_Os03g35520.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2902 3 19687520 SNP-3.19686030. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 | |
| 2903 3 19688121 SNP-3.19686631. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2904 3 19688841 SNP-3.19687351. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2905 3 19690754 SNP-3.19689264. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2906 3 19690846 SNP-3.19689356. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2907 3 19698612 SNP-3.19697122. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2908 3 19702588 SNP-3.19701098. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 | |
| 2909 3 19703781 SNP-3.19702291. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. | |
| 2910 3 19704698 SNP-3.19703208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 | |
| 2911 3 19705578 SNP-3.19704088. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 2912 3 19707481 SNP-3.19705991. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 | |
| 2913 3 19716025 SNP-3.19714535. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 | |
| 2914 3 19716093 SNP-3.19714603. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2915 3 19717564 SNP-3.19716074. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 | |
| 2916 3 19717948 SNP-3.19716458. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2917 3 19718204 SNP-3.19716714. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2918 3 19718527 SNP-3.19717037. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2919 3 19718720 SNP-3.19717230. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 | |
| 2920 3 19719018 SNP-3.19717528. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 | |
| 2921 3 19719052 SNP-3.19717562. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2922 3 19720745 SNP-3.19719255. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gcC/gcG|p.Ala224Ala/c.672A>G|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 | |
| 2923 3 19720838 SNP-3.19719348. C A . . PR;EFF=synonymous_variant(LOW|SILENT|caG/caA|p.Gln255Gln/c.765C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 | |
| 2924 3 19721419 SNP-3.19719929. C A . . PR;EFF=intron_variant(MODIFIER|||c.1291-22C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2925 3 19721460 SNP-3.19719970. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGt/aAt|p.Ser437Asn/c.1310C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2926 3 19721861 SNP-3.19720371. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttc/Gtc|p.Phe571Val/c.1711A>G|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 | |
| 2927 3 19721975 SNP-3.19720485. C A . . PR;EFF=synonymous_variant(LOW||Agt/Agt|p.Ser609Ser/c.1825C>A|642|LOC_Os03g35570|protein_coding|CODING|LOC_Os03g35570.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2928 3 19722889 SNP-3.19721399. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2929 3 19723107 SNP-3.19721617. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 | |
| 2930 3 19723127 SNP-3.19721637. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. | |
| 2931 3 19723998 SNP-3.19722508. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaA/gaC|p.Glu420Asp/c.1260T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2932 3 19724422 SNP-3.19722932. A G . . PR;EFF=synonymous_variant(LOW||cCa/cCa|p.Pro279Pro/c.836T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 | |
| 2933 3 19724860 SNP-3.19723370. A G . . PR;EFF=synonymous_variant(LOW||Cgg/Cgg|p.Arg199Arg/c.595T>C|497|LOC_Os03g35580|protein_coding|CODING|LOC_Os03g35580.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 | |
| 2934 3 19725751 SNP-3.19724261. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2935 3 19727065 SNP-3.19725575. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaT/gaA|p.Asp27Glu/c.81C>A|868|LOC_Os03g35600|protein_coding|CODING|LOC_Os03g35600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 | |
| 2936 3 19727730 SNP-3.19726240. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cGg/cAg|p.Arg249Gln/c.746C>A|868|LOC_Os03g35600|protein_coding|CODING|LOC_Os03g35600.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2937 3 19731749 SNP-3.19730259. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 | |
| 2938 3 19731783 SNP-3.19730293. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2939 3 19732132 SNP-3.19730642. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2940 3 19734634 SNP-3.19733144. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2941 3 19735124 SNP-3.19733634. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2942 3 19735146 SNP-3.19733656. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 | |
| 2943 3 19741750 SNP-3.19740260. C A . . PR;EFF=intron_variant(MODIFIER|||c.508-571G>T|417|LOC_Os03g35640|protein_coding|CODING|LOC_Os03g35640.1|4|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 | |
| 2944 3 19744116 SNP-3.19742626. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 | |
| 2945 3 19744886 SNP-3.19743396. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. | |
| 2946 3 19747751 SNP-3.19746261. C A . . PR;EFF=intron_variant(MODIFIER|||c.112-457C>A|134|LOC_Os03g35650|protein_coding|CODING|LOC_Os03g35650.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2947 3 19747918 SNP-3.19746428. C A . . PR;EFF=intron_variant(MODIFIER|||c.112-290C>A|134|LOC_Os03g35650|protein_coding|CODING|LOC_Os03g35650.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 2948 3 19751038 SNP-3.19749548. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2949 3 19762971 SNP-3.19761481. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 | |
| 2950 3 19763222 SNP-3.19761732. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 | |
| 2951 3 19764705 SNP-3.19763215. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2952 3 19765552 SNP-3.19764062. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2953 3 19766171 SNP-3.19764681. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2954 3 19767442 SNP-3.19765952. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Ttg/Atg|p.Leu119Met/c.355C>A|798|LOC_Os03g35690|protein_coding|CODING|LOC_Os03g35690.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. | |
| 2955 3 19770398 SNP-3.19768908. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2956 3 19777683 SNP-3.19776193. A G . . PR;EFF=synonymous_variant(LOW||Cag/Cag|p.Gln293Gln/c.877T>C|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 2957 3 19777886 SNP-3.19776396. A G . . PR;EFF=intron_variant(MODIFIER|||c.776-102T>C|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 | |
| 2958 3 19777977 SNP-3.19776487. C A . . PR;EFF=intron_variant(MODIFIER|||c.775+26G>T|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 2959 3 19778078 SNP-3.19776588. C A . . PR;EFF=stop_gained(HIGH|NONSENSE|Gag/Tag|p.Glu234*/c.700G>T|506|LOC_Os03g35710|protein_coding|CODING|LOC_Os03g35710.1|4|1);LOF=(LOC_Os03g35710|LOC_Os03g35710|1|1.00);NMD=(LOC_Os03g35710|LOC_Os03g35710|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/1 | |
| 2960 3 19785679 SNP-3.19784189. A G . . PR;EFF=intron_variant(MODIFIER|||c.885+96T>C|326|LOC_Os03g35720|protein_coding|CODING|LOC_Os03g35720.1|1|1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 | |
| 2961 3 19786568 SNP-3.19785078. C A . . PR;EFF=synonymous_variant(LOW||cTt/cTt|p.Leu31Leu/c.92G>T|326|LOC_Os03g35720|protein_coding|CODING|LOC_Os03g35720.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2962 3 19787590 SNP-3.19786100. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2963 3 19788235 SNP-3.19786745. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. | |
| 2964 3 19788877 SNP-3.19787387. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2965 3 19789181 SNP-3.19787691. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 | |
| 2966 3 19790313 SNP-3.19788823. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 | |
| 2967 3 19793580 SNP-3.19792090. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2968 3 19794579 SNP-3.19793089. C A . . PR;EFF=synonymous_variant(LOW||caA/caA|p.Gln51Gln/c.153C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2969 3 19795654 SNP-3.19794164. C A . . PR;EFF=synonymous_variant(LOW||cAc/cAc|p.His383His/c.1148C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2970 3 19796643 SNP-3.19795153. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGa/gAa|p.Gly509Glu/c.1526C>A|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2971 3 19796959 SNP-3.19795469. A G . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtG|p.Val614Val/c.1842A>G|659|LOC_Os03g35730|protein_coding|CODING|LOC_Os03g35730.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 | |
| 2972 3 19798380 SNP-3.19796890. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2973 3 19799905 SNP-3.19798415. A G . . PR;EFF=intron_variant(MODIFIER|||c.2695+46T>C|1152|LOC_Os03g35740|protein_coding|CODING|LOC_Os03g35740.1|5|1) GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2974 3 19801185 SNP-3.19799695. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cgg/Tgg|p.Arg579Trp/c.1735G>T|1152|LOC_Os03g35740|protein_coding|CODING|LOC_Os03g35740.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2975 3 19805029 SNP-3.19803539. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 2976 3 19805536 SNP-3.19804046. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2977 3 19808714 SNP-3.19807224. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 2978 3 19810983 SNP-3.19809493. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 | |
| 2979 3 19811307 SNP-3.19809817. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 2980 3 19815261 SNP-3.19813771. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2981 3 19816969 SNP-3.19815479. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 | |
| 2982 3 19821451 SNP-3.19819961. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 | |
| 2983 3 19823020 SNP-3.19821530. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. | |
| 2984 3 19825097 SNP-3.19823607. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 2985 3 19825898 SNP-3.19824408. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 | |
| 2986 3 19827035 SNP-3.19825545. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 | |
| 2987 3 19827178 SNP-3.19825688ct. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 2988 3 19827206 SNP-3.19825716. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 2989 3 19831789 SNP-3.19830299. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2990 3 19832788 SNP-3.19831298. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 | |
| 2991 3 19834159 SNP-3.19832669. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gGt/gCt|p.Gly1767Ala/c.5300T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2992 3 19834518 SNP-3.19833028. C A . . PR;EFF=synonymous_variant(LOW|SILENT|gtC/gtT|p.Val1647Val/c.4941G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 2993 3 19834644 SNP-3.19833154. C A . . PR;EFF=synonymous_variant(LOW|SILENT|acC/acT|p.Thr1605Thr/c.4815G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 2994 3 19834860 SNP-3.19833370. A G . . PR;EFF=intron_variant(MODIFIER|||c.4688-89T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 2995 3 19834876 SNP-3.19833386. C A . . PR;EFF=intron_variant(MODIFIER|||c.4688-105G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1) GT ./. 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 | |
| 2996 3 19835332 SNP-3.19833842. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gga/Cga|p.Gly1480Arg/c.4438T>C|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 | |
| 2997 3 19836206 SNP-3.19834716. C A . . PR;EFF=intron_variant(MODIFIER|||c.4386+204G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|5|1) GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2998 3 19836924 SNP-3.19835434. C A . . PR;EFF=intron_variant(MODIFIER|||c.4008+44G>T|1907|LOC_Os03g35788|protein_coding|CODING|LOC_Os03g35788.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 2999 3 19846674 SNP-3.19845184. C A . . PR;EFF=intron_variant(MODIFIER|||c.111+19G>T|63|LOC_Os03g35810|protein_coding|CODING|LOC_Os03g35810.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3000 3 19846719 SNP-3.19845229. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Tct|p.Pro29Ser/c.85G>T|63|LOC_Os03g35810|protein_coding|CODING|LOC_Os03g35810.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3001 3 19858269 SNP-3.19856779. C A . . PR;EFF=intron_variant(MODIFIER|||c.2275-31G>T|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|5|1) GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3002 3 19858450 SNP-3.19856960. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Agc/Cgc|p.Ser711Arg/c.2131T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 3003 3 19859491 SNP-3.19858001. A G . . PR;EFF=intron_variant(MODIFIER|||c.1266+83T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|3|1) GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 3004 3 19860748 SNP-3.19859258. A G . . PR;EFF=splice_region_variant(LOW|||c.128T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|1|1),intron_variant(MODIFIER|||c.128-3T>C|775|LOC_Os03g35840|protein_coding|CODING|LOC_Os03g35840.1|1|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 | |
| 3005 3 19861709 SNP-3.19860219. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3006 3 19862076 SNP-3.19860586. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3007 3 19864083 SNP-3.19862593. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 | |
| 3008 3 19864785 SNP-3.19863295. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||689|c.*571T>C|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME),3_prime_UTR_variant(MODIFIER||689|c.*512T>C|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 | |
| 3009 3 19865578 SNP-3.19864088. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr83Ser/c.247G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),missense_variant(MODERATE|MISSENSE|Act/Tct|p.Thr83Ser/c.247G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 | |
| 3010 3 19866828 SNP-3.19865338. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1004|c.-1004G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1004|c.-1004G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3011 3 19866953 SNP-3.19865463. C A . . PR;EFF=5_prime_UTR_variant(MODIFIER||1129|c.-1129G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME),5_prime_UTR_variant(MODIFIER||1129|c.-1129G>T|116|LOC_Os03g35849|protein_coding|CODING|LOC_Os03g35849.2|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3012 3 19868815 SNP-3.19867325. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 3013 3 19869761 SNP-3.19868271. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 | |
| 3014 3 19871920 SNP-3.19870430. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 | |
| 3015 3 19871999 SNP-3.19870509. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 3016 3 19872532 SNP-3.19871042. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 | |
| 3017 3 19873068 SNP-3.19871578. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 | |
| 3018 3 19873396 SNP-3.19871906. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 | |
| 3019 3 19874408 SNP-3.19872918. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3020 3 19877262 SNP-3.19875772. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 | |
| 3021 3 19879414 SNP-3.19877924. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 | |
| 3022 3 19879842 SNP-3.19878352. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 3023 3 19880957 SNP-3.19879467. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3024 3 19881090 SNP-3.19879600. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3025 3 19885100 SNP-3.19883610. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Cct/Gct|p.Pro61Ala/c.181A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3026 3 19885279 SNP-3.19883789. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ttG/ttA|p.Leu120Leu/c.360C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. | |
| 3027 3 19885950 SNP-3.19884460. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aTa/aAa|p.Ile344Lys/c.1031C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 3028 3 19886370 SNP-3.19884880. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gaC/gaA|p.Asp413Glu/c.1239C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|2|1) GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3029 3 19886609 SNP-3.19885119. C A . . PR;EFF=intron_variant(MODIFIER|||c.1381-44C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 3030 3 19886701 SNP-3.19885211. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tca/Aca|p.Ser477Thr/c.1429C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3031 3 19887075 SNP-3.19885585. A G . . PR;EFF=synonymous_variant(LOW|SILENT|ttA/ttG|p.Leu552Leu/c.1656A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|5|1) GT 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. | |
| 3032 3 19887290 SNP-3.19885800. A G . . PR;EFF=synonymous_variant(LOW|SILENT|cgC/cgG|p.Arg609Arg/c.1827A>G|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 0/1 0/0 ./. ./. ./. 0/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 3033 3 19887468 SNP-3.19885978. C A . . PR;EFF=synonymous_variant(LOW||Aaa/Aaa|p.Lys669Lys/c.2005C>A|682|LOC_Os03g35860|protein_coding|CODING|LOC_Os03g35860.1|6|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 3034 3 19887739 SNP-3.19886249. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 | |
| 3035 3 19887755 SNP-3.19886265. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 3036 3 19891404 SNP-3.19889914. A G . . PR;EFF=synonymous_variant(LOW||cCt/cCt|p.Pro944Pro/c.2831T>C|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|7|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 | |
| 3037 3 19892516 SNP-3.19891026. C A . . PR;EFF=intron_variant(MODIFIER|||c.2062-24G>T|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|5|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. | |
| 3038 3 19892740 SNP-3.19891250. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tAc/tTc|p.Tyr657Phe/c.1970G>T|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|5|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3039 3 19895384 SNP-3.19893894. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|Gag/Cag|p.Glu3Gln/c.7T>C|1590|LOC_Os03g35870|protein_coding|CODING|LOC_Os03g35870.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. | |
| 3040 3 19899833 SNP-3.19898343. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 | |
| 3041 3 19901647 SNP-3.19900157. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3042 3 19902294 SNP-3.19900804. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 | |
| 3043 3 19904535 SNP-3.19903045. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||3042|c.*3042T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 | |
| 3044 3 19905964 SNP-3.19904474. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1613|c.*1613G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3045 3 19906300 SNP-3.19904810. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||1277|c.*1277G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3046 3 19906507 SNP-3.19905017. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||1070|c.*1070T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1) GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. | |
| 3047 3 19906601 SNP-3.19905111. C A . . PR;EFF=3_prime_UTR_variant(MODIFIER||976|c.*976G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 3048 3 19906624 SNP-3.19905134. A G . . PR;EFF=3_prime_UTR_variant(MODIFIER||953|c.*953T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3049 3 19907698 SNP-3.19906208. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAg/cTg|p.Gln25Leu/c.74G>T|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3050 3 19908511 SNP-3.19907021. A G . . PR;EFF=5_prime_UTR_variant(MODIFIER||740|c.-530T>C|64|LOC_Os03g35886|protein_coding|CODING|LOC_Os03g35886.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3051 3 19908967 SNP-3.19907477. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 3052 3 19909565 SNP-3.19908075. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 | |
| 3053 3 19909852 SNP-3.19908362. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3054 3 19917770 SNP-3.19916280. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aca/Tca|p.Thr664Ser/c.1990G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 | |
| 3055 3 19917982 SNP-3.19916492. A G . . PR;EFF=synonymous_variant(LOW||aCt/aCt|p.Thr593Thr/c.1778T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 3056 3 19918171 SNP-3.19916681. C A . . PR;EFF=synonymous_variant(LOW||cTa/cTa|p.Leu530Leu/c.1589G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 | |
| 3057 3 19918273 SNP-3.19916783. A G . . PR;EFF=missense_variant(MODERATE|MISSENSE|gTc/gCc|p.Val496Ala/c.1487T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|4|1) GT ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 | |
| 3058 3 19918600 SNP-3.19917110. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|cAt/cTt|p.His409Leu/c.1226G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3059 3 19918707 SNP-3.19917217. A G . . PR;EFF=synonymous_variant(LOW|SILENT|acT/acC|p.Thr373Thr/c.1119T>C|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|3|1) GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 | |
| 3060 3 19919419 SNP-3.19917929. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gAa/gTa|p.Glu234Val/c.701G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 3061 3 19920044 SNP-3.19918554. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Att/Ttt|p.Ile26Phe/c.76G>T|691|LOC_Os03g35910|protein_coding|CODING|LOC_Os03g35910.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3062 3 19921742 SNP-3.19920252. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 | |
| 3063 3 19922833 SNP-3.19921343. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 3064 3 19922943 SNP-3.19921453. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3065 3 19924759 SNP-3.19923269. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 | |
| 3066 3 19924786 SNP-3.19923296. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3067 3 19929387 SNP-3.19927897. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3068 3 19929707 SNP-3.19928217. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 | |
| 3069 3 19930698 SNP-3.19929208. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 | |
| 3070 3 19931769 SNP-3.19930279. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3071 3 19932125 SNP-3.19930635. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3072 3 19932245 SNP-3.19930755. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 | |
| 3073 3 19935876 SNP-3.19934386. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3074 3 19936724 SNP-3.19935234. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|gCa/gAa|p.Ala188Glu/c.563C>A|262|LOC_Os03g35930|protein_coding|CODING|LOC_Os03g35930.1|1|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3075 3 19939524 SNP-3.19938034. A G . . PR;EFF=synonymous_variant(LOW||cGa/cGa|p.Arg498Arg/c.1493A>G|649|LOC_Os03g35940|protein_coding|CODING|LOC_Os03g35940.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT ./. 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 | |
| 3076 3 19941914 SNP-3.19940424. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3077 3 19942216 SNP-3.19940726. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3078 3 19944547 SNP-3.19943057. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3079 3 19944661 SNP-3.19943171. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 3080 3 19948191 SNP-3.19946701. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Tct/Act|p.Ser121Thr/c.361C>A|126|LOC_Os03g35950|protein_coding|CODING|LOC_Os03g35950.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3081 3 19948632 SNP-3.19947142. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 | |
| 3082 3 19948939 SNP-3.19947449. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3083 3 19949392 SNP-3.19947902. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 | |
| 3084 3 19952853 SNP-3.19951363. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Aac/Tac|p.Asn126Tyr/c.376G>T|425|LOC_Os03g35970|protein_coding|CODING|LOC_Os03g35970.1|4|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 | |
| 3085 3 19953252 SNP-3.19951762. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|Acg/Tcg|p.Thr39Ser/c.115G>T|425|LOC_Os03g35970|protein_coding|CODING|LOC_Os03g35970.1|2|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 | |
| 3086 3 19956745 SNP-3.19955255. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3087 3 19957190 SNP-3.19955700. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 | |
| 3088 3 19957532 SNP-3.19956042. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 | |
| 3089 3 19961777 SNP-3.19960287. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3090 3 19962829 SNP-3.19961339. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|aGc/aTc|p.Ser427Ile/c.1280G>T|484|LOC_Os03g35990|protein_coding|CODING|LOC_Os03g35990.1|8|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 3091 3 19969198 SNP-3.19967708. A G . . PR;EFF=intron_variant(MODIFIER|||c.3369-55T>C|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|4|1) GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 | |
| 3092 3 19969228 SNP-3.19967738. C A . . PR;EFF=intron_variant(MODIFIER|||c.3369-85G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|4|1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3093 3 19969947 SNP-3.19968457. C A . . PR;EFF=synonymous_variant(LOW||aTt/aTt|p.Ile1047Ile/c.3140G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3094 3 19970174 SNP-3.19968684. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|ttA/ttT|p.Leu971Phe/c.2913G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3095 3 19970612 SNP-3.19969122. A G . . PR;EFF=synonymous_variant(LOW|SILENT|tcA/tcC|p.Ser825Ser/c.2475T>C|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3096 3 19971695 SNP-3.19970205. C A . . PR;EFF=synonymous_variant(LOW||ctT/ctT|p.Leu464Leu/c.1392G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|3|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3097 3 19973386 SNP-3.19971896. C A . . PR;EFF=missense_variant(MODERATE|MISSENSE|tCt/tTt|p.Ser7Phe/c.20G>T|1184|LOC_Os03g36000|protein_coding|CODING|LOC_Os03g36000.1|1|1|WARNING_REF_DOES_NOT_MATCH_GENOME) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 | |
| 3098 3 19974011 SNP-3.19972521. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 | |
| 3099 3 19975116 SNP-3.19973626. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 | |
| 3100 3 19976521 SNP-3.19975031. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 | |
| 3101 3 19983247 SNP-3.19981757. C A . . PR;EFF=synonymous_variant(LOW|SILENT|ctC/ctA|p.Leu643Leu/c.1929C>A|1461|LOC_Os03g36030|protein_coding|CODING|LOC_Os03g36030.1|1|1) GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 | |
| 3102 3 19989349 SNP-3.19987859. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 | |
| 3103 3 19989539 SNP-3.19988049. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 | |
| 3104 3 19991345 SNP-3.19989855. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 | |
| 3105 3 19991997 SNP-3.19990507. A G . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 | |
| 3106 3 19992016 SNP-3.19990526. C A . . PR;EFF=intergenic_region(MODIFIER||||||||||1) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |