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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author dereeper
date Tue, 14 Aug 2018 07:59:19 -0400
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1 beagle.jar (r1399)
2 Copyright (C) 2014 Brian L. Browning
3 Enter "java -jar beagle.jar" for a summary of command line arguments.
4 Start time: 10:43 AM CEST on 20 Jul 2018
5
6 Command line: java -Xmx1963m -jar beagle.jar
7 gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat
8 phase-its=5
9 impute-its=5
10 out=out
11
12 reference samples: 0
13 target samples: 257
14 singles: 257
15 duos: 0
16 trios: 0
17
18 Window 1 [ 3:15001183-19992016 ]
19 target markers: 3094
20
21 Starting burn-in iterations
22
23 Window=1 Iteration=1
24 Time for building model: 5 seconds
25 Time for sampling (singles): 5 seconds
26 Singles model
27 mean edges/level: 21 max edges/level: 39
28 mean edges/node: 1.655 mean count/edge: 24
29
30 Window=1 Iteration=2
31 Time for building model: 4 seconds
32 Time for sampling (singles): 5 seconds
33 Singles model
34 mean edges/level: 23 max edges/level: 46
35 mean edges/node: 1.513 mean count/edge: 22
36
37 Window=1 Iteration=3
38 Time for building model: 7 seconds
39 Time for sampling (singles): 6 seconds
40 Singles model
41 mean edges/level: 25 max edges/level: 52
42 mean edges/node: 1.425 mean count/edge: 21
43
44 Window=1 Iteration=4
45 Time for building model: 4 seconds
46 Time for sampling (singles): 7 seconds
47 Singles model
48 mean edges/level: 27 max edges/level: 51
49 mean edges/node: 1.393 mean count/edge: 19
50
51 Window=1 Iteration=5
52 Time for building model: 4 seconds
53 Time for sampling (singles): 5 seconds
54 Singles model
55 mean edges/level: 28 max edges/level: 57
56 mean edges/node: 1.374 mean count/edge: 18
57
58 Starting phasing iterations
59
60 Window=1 Iteration=6
61 Time for building model: 5 seconds
62 Time for sampling (singles): 6 seconds
63 Singles model
64 mean edges/level: 29 max edges/level: 54
65 mean edges/node: 1.349 mean count/edge: 18
66
67 Window=1 Iteration=7
68 Time for building model: 4 seconds
69 Time for sampling (singles): 7 seconds
70 Singles model
71 mean edges/level: 29 max edges/level: 56
72 mean edges/node: 1.362 mean count/edge: 18
73
74 Window=1 Iteration=8
75 Time for building model: 5 seconds
76 Time for sampling (singles): 7 seconds
77 Singles model
78 mean edges/level: 29 max edges/level: 51
79 mean edges/node: 1.346 mean count/edge: 18
80
81 Window=1 Iteration=9
82 Time for building model: 5 seconds
83 Time for sampling (singles): 7 seconds
84 Singles model
85 mean edges/level: 29 max edges/level: 57
86 mean edges/node: 1.352 mean count/edge: 18
87
88 Window=1 Iteration=10
89 Time for building model: 3 seconds
90 Time for sampling (singles): 6 seconds
91 Singles model
92 mean edges/level: 30 max edges/level: 56
93 mean edges/node: 1.340 mean count/edge: 17
94
95 Number of markers: 3094
96 Total time for building model: 46 seconds
97 Total time for sampling: 1 minute 2 seconds
98 Total run time: 1 minute 53 seconds
99
100 End time: 10:45 AM CEST on 20 Jul 2018
101 beagle.jar (r1399) finished