view Galaxy-Workflow-Haplotype_analysis.ga @ 0:f81b8b6a97fb draft

planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
author dereeper
date Tue, 14 Aug 2018 08:32:12 -0400
parents
children bd20187f16c5
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{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "Haplotype_analysis", 
    "steps": {
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            "input_connections": {}, 
            "inputs": [
                {
                    "description": "runtime parameter for tool VCFtools Filter", 
                    "name": "input"
                }
            ], 
            "label": null, 
            "name": "VCFtools Filter", 
            "outputs": [
                {
                    "name": "fileout", 
                    "type": "vcf"
                }, 
                {
                    "name": "fileout_map", 
                    "type": "tabular"
                }, 
                {
                    "name": "filelog", 
                    "type": "txt"
                }
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            "workflow_outputs": []
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        "1": {
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            "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/beagle/Beagle/1.0.0", 
            "errors": null, 
            "id": 1, 
            "input_connections": {
                "vcf_input": {
                    "id": 0, 
                    "output_name": "fileout"
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            }, 
            "inputs": [
                {
                    "description": "runtime parameter for tool Beagle", 
                    "name": "vcf_input"
                }
            ], 
            "label": null, 
            "name": "Beagle", 
            "outputs": [
                {
                    "name": "vcf_ouput", 
                    "type": "vcf"
                }, 
                {
                    "name": "log", 
                    "type": "txt"
                }
            ], 
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                "name": "beagle", 
                "owner": "vmarcon", 
                "tool_shed": "testtoolshed.g2.bx.psu.edu"
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            "tool_state": "{\"phase\": \"\\\"5\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"impute\": \"\\\"5\\\"\", \"vcf_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
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        "2": {
            "annotation": "", 
            "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/sniplay/getHaplotypesFromPhasedVCF/2.0.0", 
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            "id": 2, 
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                "input": {
                    "id": 1, 
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            }, 
            "inputs": [
                {
                    "description": "runtime parameter for tool Get Haplotypes From Phased VCF", 
                    "name": "input"
                }
            ], 
            "label": null, 
            "name": "Get Haplotypes From Phased VCF", 
            "outputs": [
                {
                    "name": "output_distinct", 
                    "type": "txt"
                }, 
                {
                    "name": "output_haplo", 
                    "type": "fasta"
                }, 
                {
                    "name": "output_distinct_fasta", 
                    "type": "fasta"
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            ], 
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                "name": "sniplay", 
                "owner": "vmarcon", 
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            "tool_state": "{\"output_label\": \"\\\"Haplotypes\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", 
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            "type": "tool", 
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            "workflow_outputs": []
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        "3": {
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            "content_id": "testtoolshed.g2.bx.psu.edu/repos/vmarcon/haplophyle/haplophyle/1.0.0", 
            "errors": null, 
            "id": 3, 
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                "input": {
                    "id": 2, 
                    "output_name": "output_distinct_fasta"
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            }, 
            "inputs": [
                {
                    "description": "runtime parameter for tool Haplophyle", 
                    "name": "input"
                }
            ], 
            "label": null, 
            "name": "Haplophyle", 
            "outputs": [
                {
                    "name": "fileout", 
                    "type": "json"
                }, 
                {
                    "name": "dotfile", 
                    "type": "txt"
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                {
                    "name": "filelog", 
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            "post_job_actions": {}, 
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                "name": "haplophyle", 
                "owner": "vmarcon", 
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            "tool_state": "{\"color\": \"{\\\"__current_case__\\\": 0, \\\"choice\\\": \\\"false\\\"}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", 
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                    "description": "runtime parameter for tool Cytoscape", 
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            "name": "Cytoscape", 
            "outputs": [
                {
                    "name": "cytoscape_html", 
                    "type": "html"
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                {
                    "name": "filelog", 
                    "type": "txt"
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                "name": "cytoscape", 
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            "uuid": "8e3d9a5c-09a2-4ef1-acd5-07ca5bb43484", 
            "workflow_outputs": []
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    "tags": [], 
    "uuid": "2ce7df85-4151-40cc-b636-a135663b90ee"
}