Mercurial > repos > dereeper > mlmm
comparison mlmm/MLMM.sh @ 0:6b7107812931 draft
Uploaded
author | dereeper |
---|---|
date | Thu, 02 Jul 2015 05:42:38 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:6b7107812931 |
---|---|
1 #!/bin/bash | |
2 geno=$1 | |
3 map=$2 | |
4 pheno=$3 | |
5 steps=$4 | |
6 method=$5 | |
7 output=$6 | |
8 pdf=$7 | |
9 kinship=$8 | |
10 rss=$9 | |
11 step_table=${10} | |
12 log=${11} | |
13 | |
14 directory=`dirname $0` | |
15 mkdir tmpdir$$ | |
16 cp -rf $geno tmpdir$$/geno | |
17 cp -rf $map tmpdir$$/map | |
18 cp -rf $pheno tmpdir$$/pheno | |
19 | |
20 perl $directory/MLMM.pl -g tmpdir$$/geno -i tmpdir$$/map -p tmpdir$$/pheno -s $steps -m $method -o tmpdir$$/output -d $directory/source_library >>$log 2>&1 | |
21 | |
22 mv tmpdir$$/output.pdf $pdf | |
23 mv tmpdir$$/output.kinship $kinship | |
24 mv tmpdir$$/output.res_asso $output | |
25 mv tmpdir$$/output.rss $rss | |
26 mv tmpdir$$/output.steptable $step_table | |
27 | |
28 |