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comparison MLMM.sh @ 1:380b364980f9 draft default tip

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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author dereeper
date Mon, 16 Apr 2018 08:50:05 -0400
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0:6b7107812931 1:380b364980f9
1 #!/bin/bash
2 geno=$1
3 map=$2
4 pheno=$3
5 steps=$4
6 method=$5
7 output=$6
8 pdf=$7
9 kinship=$8
10 rss=$9
11 step_table=${10}
12 log=${11}
13
14 directory=`dirname $0`
15 mkdir tmpdir$$
16 cp -rf $geno tmpdir$$/geno
17 cp -rf $map tmpdir$$/map
18 cp -rf $pheno tmpdir$$/pheno
19
20 perl $directory/MLMM.pl -g tmpdir$$/geno -i tmpdir$$/map -p tmpdir$$/pheno -s $steps -m $method -o tmpdir$$/output -d $directory/source_library >>$log 2>&1
21
22 mv tmpdir$$/output.pdf $pdf
23 mv tmpdir$$/output.kinship $kinship
24 mv tmpdir$$/output.res_asso $output
25 mv tmpdir$$/output.rss $rss
26 mv tmpdir$$/output.steptable $step_table
27
28