Mercurial > repos > dereeper > pangenome_explorer

comparison COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft

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author dereeper
date Thu, 30 May 2024 11:52:25 +0000
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2:97e4e3e818b6 3:e42d30da7a74
1 >Feature EPE_c
2 191 310 gene
3 locus_tag EPE_c00010
4 191 310 misc_RNA
5 inference COORDINATES:profile:Infernal:1.1
6 product Thr_leader
7 336 2798 gene
8 locus_tag EPE_c00020
9 gene thrA
10 336 2798 CDS
11 protein_id gnl|goetting|EPE_c00020
12 EC_number 1.1.1.3
13 EC_number 2.7.2.4
14 inference ab initio prediction:Prodigal:2.60
15 inference similar to AA sequence:K-12_MG1655:NP_414543.1
16 product bifunctional aspartokinase/homoserine dehydrogenase 1
17 3168 4697 gene
18 locus_tag EPE_c00030
19 gene rrsH
20 3168 4697 rRNA
21 inference COORDINATES:profile:RNAmmer:1.2
22 product 16S ribosomal RNA
23 4771 4847 gene
24 locus_tag EPE_c00040
25 pseudo
26 4771 4847 tRNA
27 inference COORDINATES:profile:Aragorn:1.2
28 product tRNA-Pseudo-xxx
29 pseudo
30 7154 5010 gene
31 locus_tag EPE_c00050
32 gene fadJ
33 7154 5010 CDS
34 protein_id gnl|goetting|EPE_c00050
35 EC_number 1.1.1.35
36 EC_number 4.2.1.17
37 EC_number 5.1.2.3
38 EC_number 5.3.3.8
39 inference ab initio prediction:Prodigal:2.60
40 inference similar to AA sequence:K-12_MG1655:NP_416843.1
41 product fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase
42 7068 7430 gene
43 locus_tag EPE_c00060
44 gene ssrA
45 7068 7430 tmRNA
46 inference COORDINATES:profile:Aragorn:1.2
47 product transfer-messenger RNA, SsrA
48 7513 8883 repeat_region
49 rpt_family CRISPR
50 score 23
51 8979 9275 gene
52 locus_tag EPE_c00080
53 8979 9275 CDS
54 protein_id gnl|goetting|EPE_c00080
55 inference ab initio prediction:Prodigal:2.60
56 inference similar to AA sequence:K-12_MG1655:NP_414546.1
57 note DUF2502 family putative periplasmic protein
58 product hypothetical protein
59 >Feature EPE_89p
60 61 369 gene
61 pseudo
62 locus_tag EPE_89p00010
63 gene ydhA
64 gene_desc hypothetical protein fragment