Mercurial > repos > dereeper > pangenome_explorer
changeset 22:891845608100 draft default tip
Uploaded
| author | dereeper |
|---|---|
| date | Sun, 11 May 2025 18:59:19 +0000 |
| parents | f6afd1efb86b |
| children | |
| files | PanExplorer.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/PanExplorer.xml Thu Feb 27 17:57:52 2025 +0000 +++ b/PanExplorer.xml Sun May 11 18:59:19 2025 +0000 @@ -21,6 +21,7 @@ cat config.yaml >$logfile; touch $vcf; +touch $vntr_matrix; #if $software=="pgap" snakemake --cores 1 --config identity=$min_identity -s \$PANEX_PATH/Snakemake_files/Snakefile_wget_PGAP_heatmap_upset_COG >>$logfile 2>&1; @@ -85,7 +86,7 @@ <data from_work_dir="outputs/GCskew.txt" format="txt" name="gcfile" label="GC_percent"/> <data from_work_dir="outputs/upsetr.svg" format="svg" name="upset" label="Upset Diagram"/> <data from_work_dir="outputs/heatmap.svg.gz" format="svg" name="heatmap" label="Presence Absence Heatmap"/> - <data from_work_dir="outputs/heatmap.svg.heatmap_plotly.html" format="html" name="heatmap_html" label="Presence Absence Heatmap interactive"/> + <data from_work_dir="outputs/vntr_matrix.tsv" format="tabular" name="vntr_matrix" label="VNTR matrix"/> <data from_work_dir="outputs/cog_stats.txt" format="tabular" name="outcog_stat" label="COG category counts"/> <data from_work_dir="outputs/cog_stats2.txt" format="tabular" name="outcog_stat2" label="COG category 2 counts"/> <data from_work_dir="outputs/cog_of_clusters.txt" format="tabular" name="outcog_clusters" label="COG of clusters"/>