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comparison PGAP_wrapper2.pl @ 2:041355b97140 draft

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Uploaded
author dereeper
date Thu, 24 Jun 2021 15:01:02 +0000
parents 6d3580552457
children d8c5bea1cce2
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1:6d3580552457 2:041355b97140
12 12
13 where <args> are: 13 where <args> are:
14 14
15 -g, --genes <list of gene fasta files. Comma separated list> 15 -g, --genes <list of gene fasta files. Comma separated list>
16 -p, --proteins <list of protein fasta files. Comma separated list> 16 -p, --proteins <list of protein fasta files. Comma separated list>
17 -o, --order <list of samples in the same order. Comma separated list> 17 -l, --list <list of samples in the same order. Comma separated list>
18 -o, --out <output name> 18 -o, --out <output name>
19 ~; 19 ~;
20 $usage .= "\n"; 20 $usage .= "\n";
21 21
22 my ($genes,$proteins,$out,$order); 22 my ($genes,$proteins,$out,$order);
23 23
24 GetOptions( 24 GetOptions(
25 "genes=s" => \$genes, 25 "genes=s" => \$genes,
26 "proteins=s" => \$proteins, 26 "proteins=s" => \$proteins,
27 "out=s" => \$out, 27 "out=s" => \$out,
28 "order=s" => \$order 28 "list=s" => \$order
29 ); 29 );
30 30
31 31
32 die $usage 32 die $usage
33 if ( !$proteins || !$genes || !$out || !$order); 33 if ( !$proteins || !$genes || !$out || !$order);