Mercurial > repos > dereeper > pgap

comparison PGAP_wrapper2.pl @ 7:1085c917d850 draft

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Uploaded
author dereeper
date Fri, 25 Jun 2021 16:26:16 +0000
parents d8c5bea1cce2
children e0c913351502
comparison
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6:c43a55b28d06 7:1085c917d850
63 63
64 #chdir("$dirname/PGAP-1.2.1"); 64 #chdir("$dirname/PGAP-1.2.1");
65 my $cmd = "perl $dirname/PGAP-1.2.1/PGAP.pl --input tmpdir$$ --output outdir --cluster --pangenome --variation --evolution --function --strains ".join("+",@names)." --method GF"; 65 my $cmd = "perl $dirname/PGAP-1.2.1/PGAP.pl --input tmpdir$$ --output outdir --cluster --pangenome --variation --evolution --function --strains ".join("+",@names)." --method GF";
66 system($cmd); 66 system($cmd);
67 system("cp -rf outdir/1.Orthologs_Cluster.txt $out"); 67 system("cp -rf outdir/1.Orthologs_Cluster.txt $out");
68 system("cat outdir/0.error.message");