Mercurial > repos > dereeper > pgap
comparison PGAP-1.2.1/README @ 0:83e62a1aeeeb draft
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| author | dereeper |
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| date | Thu, 24 Jun 2021 13:51:52 +0000 |
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| -1:000000000000 | 0:83e62a1aeeeb |
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| 1 -=- PGAP 1.2.1 README -=- | |
| 2 PGAP is a Pan-Genomes Analysis Pipeline. | |
| 3 | |
| 4 For the installation and usage of PGAP, please refer to manual.pdf. | |
| 5 | |
| 6 There is also a brief tutorial in manual.pdf. | |
| 7 | |
| 8 If there are any problems or suggestions in using PGAP, please mail to PGAP@big.ac.cn | |
| 9 | |
| 10 -=- Change Log 1.2.1 -=- | |
| 11 1.Fix the bug in Converter_NCBINewFormatData.pl. | |
| 12 | |
| 13 -=- Change Log 1.2.0 -=- | |
| 14 1.A new script (Converter_NCBINewFormatData.pl) was developed for converting new format bacterial genomic data from NCBI at ftp://ftp.ncbi.nlm.nih.gov/genomes/all | |
| 15 | |
| 16 -=- Change Log 1.12 -=- | |
| 17 1.Fix the bug in the Perl converter Converter_draft.pl. | |
| 18 | |
| 19 -=- Change Log 1.11 -=- | |
| 20 1.Fix the bug in the two Perl converters (Converter_finished.pl and Converter_draft.pl). | |
| 21 | |
| 22 -=- Change Log 1.1 -=- | |
| 23 1.Add sampling strategy into the pan-genome analysis module. This strategy will efficiently reduce time cost and memory cost. | |
| 24 2.Revise the input data for SNP-based phylogenetic analysis |