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comparison PGAP.xml @ 6:c43a55b28d06 draft

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Uploaded
author dereeper
date Fri, 25 Jun 2021 16:25:53 +0000
parents d8c5bea1cce2
children 86de4251345f
comparison
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5:d8c5bea1cce2 6:c43a55b28d06
18 #set $_input_file = "'{}'".format($input_file.element_identifier) 18 #set $_input_file = "'{}'".format($input_file.element_identifier)
19 ln -s '${input_file}' ${_input_file} && 19 ln -s '${input_file}' ${_input_file} &&
20 #set $named_input_files = $named_input_files + ',' + $_input_file 20 #set $named_input_files = $named_input_files + ',' + $_input_file
21 #end for 21 #end for
22 22
23 perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output 23 perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output >>$logfile 2>&1
24 ]]></command> 24 ]]></command>
25 25
26 26
27 27
28 <inputs> 28 <inputs>
30 <param format="fasta" name="proteins" type="data" multiple="true" label="Protein FASTA files"/> 30 <param format="fasta" name="proteins" type="data" multiple="true" label="Protein FASTA files"/>
31 </inputs> 31 </inputs>
32 32
33 <outputs> 33 <outputs>
34 <data format="txt" name="output" label="Pangenome presence absence matrix"/> 34 <data format="txt" name="output" label="Pangenome presence absence matrix"/>
35 35 <data format="txt" name="logfile" label="Logfile"/>
36 </outputs> 36 </outputs>
37 37
38 </tool> 38 </tool>