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comparison PGAP.xml @ 10:f33df1459a4b draft

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author dereeper
date Mon, 28 Jun 2021 19:26:50 +0000
parents 2a9923216b4a
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9:2a9923216b4a 10:f33df1459a4b
1 <tool id="PGAP" name="PGAP" version="1.0"> 1 <tool id="PGAP" name="PGAP" version="1.0">
2 <description>Pan-Genome Analysis Pipeline </description> 2 <description>Pan-Genome Analysis Pipeline </description>
3 <requirements> 3 <requirements>
4 <!--<requirement type="package" version="2.2.26">blast-legacy</requirement>--> 4 <requirement type="package" version="2.2.26">blast-legacy</requirement>
5 <requirement type="package" version="7.480">mafft</requirement> 5 <requirement type="package" version="7.480">mafft</requirement>
6 <requirement type="package" version="14.137">mcl</requirement> 6 <requirement type="package" version="14.137">mcl</requirement>
7 <requirement type="package" version="3.697">phylip</requirement> 7 <requirement type="package" version="3.697">phylip</requirement>
8 <requirement type="package" version="1.7.2">perl-bioperl</requirement> 8 <requirement type="package" version="1.7.2">perl-bioperl</requirement>
9 </requirements> --> 9 </requirements>
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 #import re 11 #import re
12 12
13 ## Creates symlinks for each input file based on the Galaxy 'element_identifier' 13 ## Creates symlinks for each input file based on the Galaxy 'element_identifier'
14 ## Used so that a human-readable name appears in the output table (instead of 'dataset_xyz.dat') 14 ## Used so that a human-readable name appears in the output table (instead of 'dataset_xyz.dat')