Mercurial > repos > dereeper > pgap

diff PGAP.xml @ 6:c43a55b28d06 draft

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Uploaded
author dereeper
date Fri, 25 Jun 2021 16:25:53 +0000
parents d8c5bea1cce2
children 86de4251345f
line wrap: on
line diff
--- a/PGAP.xml	Thu Jun 24 17:56:22 2021 +0000
+++ b/PGAP.xml	Fri Jun 25 16:25:53 2021 +0000
@@ -20,7 +20,7 @@
             #set $named_input_files = $named_input_files + ',' + $_input_file
         #end for
 
-	perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output	
+	perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output >>$logfile 2>&1 	
 	]]></command>
 
 
@@ -32,7 +32,7 @@
 
  <outputs>
 	 <data format="txt" name="output" label="Pangenome presence absence matrix"/>
-
+	 <data format="txt" name="logfile" label="Logfile"/>
 </outputs>
 
 </tool>