# HG changeset patch
# User dereeper
# Date 1624638353 0
# Node ID c43a55b28d0612d5d8333f6457c9a41360ae477d
# Parent  d8c5bea1cce2cd7ad47c0e939ca252ee44d85573
Uploaded

diff -r d8c5bea1cce2 -r c43a55b28d06 PGAP.xml
--- a/PGAP.xml	Thu Jun 24 17:56:22 2021 +0000
+++ b/PGAP.xml	Fri Jun 25 16:25:53 2021 +0000
@@ -20,7 +20,7 @@
             #set $named_input_files = $named_input_files + ',' + $_input_file
         #end for
 
-	perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output	
+	perl ${__tool_directory__}/PGAP_wrapper2.pl -g $input_files -p $proteins -l $named_input_files -o $output >>$logfile 2>&1 	
 	]]></command>
 
 
@@ -32,7 +32,7 @@
 
  <outputs>
 	 <data format="txt" name="output" label="Pangenome presence absence matrix"/>
-
+	 <data format="txt" name="logfile" label="Logfile"/>
 </outputs>
 
 </tool>