Mercurial > repos > dereeper > ragoo
comparison ragoo.pl @ 4:2a9ac8ac9120 draft
Uploaded
author | dereeper |
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date | Mon, 21 Jun 2021 21:46:52 +0000 |
parents | 2390a7ae4853 |
children | 047933657fae |
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3:2390a7ae4853 | 4:2a9ac8ac9120 |
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18 $scaffolds = $sc; | 18 $scaffolds = $sc; |
19 | 19 |
20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa"); | 20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa"); |
21 system("cp -rf $reference $tmpdir/reference.fa"); | 21 system("cp -rf $reference $tmpdir/reference.fa"); |
22 chdir($tmpdir); | 22 chdir($tmpdir); |
23 system("$dirname/ragoo.py scaffolds.fa reference.fa >>$output 2>&1"); | 23 system("$dirname/ragoo.py scaffolds.fa reference.fa >>$output 2<&1"); |
24 | 24 |
25 | 25 |
26 my %hash; | 26 my %hash; |
27 my $id; | 27 my $id; |
28 open(F,"ragoo_output/ragoo.fasta"); | 28 open(F,"ragoo_output/ragoo.fasta"); |