Mercurial > repos > dereeper > ragoo

comparison ragoo.pl @ 4:2a9ac8ac9120 draft

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Uploaded
author dereeper
date Mon, 21 Jun 2021 21:46:52 +0000
parents 2390a7ae4853
children 047933657fae
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3:2390a7ae4853 4:2a9ac8ac9120
18 $scaffolds = $sc; 18 $scaffolds = $sc;
19 19
20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa"); 20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa");
21 system("cp -rf $reference $tmpdir/reference.fa"); 21 system("cp -rf $reference $tmpdir/reference.fa");
22 chdir($tmpdir); 22 chdir($tmpdir);
23 system("$dirname/ragoo.py scaffolds.fa reference.fa >>$output 2>&1"); 23 system("$dirname/ragoo.py scaffolds.fa reference.fa >>$output 2<&1");
24 24
25 25
26 my %hash; 26 my %hash;
27 my $id; 27 my $id;
28 open(F,"ragoo_output/ragoo.fasta"); 28 open(F,"ragoo_output/ragoo.fasta");