Mercurial > repos > dereeper > ragoo
comparison ragoo.xml @ 0:90611c479c08 draft
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| author | dereeper |
|---|---|
| date | Mon, 21 Jun 2021 21:10:57 +0000 |
| parents | |
| children | fb38284b11f8 |
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| -1:000000000000 | 0:90611c479c08 |
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| 1 <tool id="ragoo" name="RaGOO" version="1.0"> | |
| 2 <description>Order and assign scaffolds</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.1">ragoo</requirement> | |
| 5 </requirements> | |
| 6 | |
| 7 <command>perl ${__tool_directory__}/ragoo.pl $input $reference $output $output2 | |
| 8 </command> | |
| 9 | |
| 10 | |
| 11 <inputs> | |
| 12 <param format="fasta" name="input" type="data" label="Fasta file with contigs to be ordered and oriented: "/> | |
| 13 <param format="fasta" name="reference" type="data" label="Reference fasta file"/> | |
| 14 | |
| 15 </inputs> | |
| 16 | |
| 17 <outputs> | |
| 18 <data format="fasta" name="output" label="Fasta output of assigned scaffolds"/> | |
| 19 <data format="fasta" name="output2" label="Fasta output of assigned scaffolds (without Chr0)"/> | |
| 20 </outputs> | |
| 21 | |
| 22 <help> | |
| 23 For full documentation, please go to the RaGOO website : https://github.com/malonge/RaGOO | |
| 24 | |
| 25 </help> | |
| 26 | |
| 27 <citations> | |
| 28 <citation type="doi"> 10.1186/s13059-019-1829-6 </citation> | |
| 29 | |
| 30 </citations> | |
| 31 </tool> |