Mercurial > repos > dereeper > ragoo
changeset 9:35f0fcf77bdf draft
Deleted selected files
| author | dereeper |
|---|---|
| date | Mon, 26 Jul 2021 18:00:34 +0000 |
| parents | f98ddf3006f0 |
| children | 83e37d6aee59 |
| files | ragoo.xml ragoo.zip |
| diffstat | 2 files changed, 0 insertions(+), 32 deletions(-) [+] |
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--- a/ragoo.xml Mon Jul 26 17:52:22 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ -<tool id="ragoo" name="RaGOO" version="1.0"> - <description>Order and assign scaffolds</description> - <requirements> - <requirement type="package" version="3.0.2">intervaltree</requirement> - <requirement type="package" version="1.21.1">numpy</requirement> - </requirements> - - <command>perl ${__tool_directory__}/ragoo.pl $input $reference $output $output2 -</command> - - - <inputs> - <param format="fasta" name="input" type="data" label="Fasta file with contigs to be ordered and oriented: "/> - <param format="fasta" name="reference" type="data" label="Reference fasta file"/> - - </inputs> - - <outputs> - <data format="fasta" name="output" label="Fasta output of assigned scaffolds"/> - <data format="fasta" name="output2" label="Fasta output of assigned scaffolds (without Chr0)"/> -</outputs> - - <help> - For full documentation, please go to the RaGOO website : https://github.com/malonge/RaGOO - -</help> - - <citations> - <citation type="doi"> 10.1186/s13059-019-1829-6 </citation> - - </citations> -</tool>