Mercurial > repos > dereeper > roary_plots
annotate Roary/t/00_requires_external.t @ 1:997f4f276c1c draft
Uploaded
| author | dereeper |
|---|---|
| date | Fri, 14 May 2021 20:42:33 +0000 |
| parents | c47a5f61bc9f |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env perl |
| 2 | |
| 3 use Test::Most; | |
| 4 use FindBin; | |
| 5 plan tests => 8; | |
| 6 bail_on_fail if 0; | |
| 7 use Env::Path 'PATH'; | |
| 8 | |
| 9 | |
| 10 my $OPSYS = $^O; | |
| 11 my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; | |
| 12 | |
| 13 for my $dir ($BINDIR, $FindBin::RealBin) { | |
| 14 if (-d $dir) { | |
| 15 $ENV{PATH} .= ":$dir"; | |
| 16 } | |
| 17 } | |
| 18 | |
| 19 ok(scalar PATH->Whence($_), "$_ in PATH") for qw(blastp makeblastdb mcl mcxdeblast bedtools prank parallel mafft); | |
| 20 |