Mercurial > repos > dereeper > roary_plots
comparison roary_plots.xml @ 0:c47a5f61bc9f draft
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| author | dereeper |
|---|---|
| date | Fri, 14 May 2021 20:27:06 +0000 |
| parents | |
| children | 997f4f276c1c |
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| -1:000000000000 | 0:c47a5f61bc9f |
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| 1 <tool id="roary_plots" name="Roary plots" version="1.0"> | |
| 2 <description>Generate plots from Roary outputs</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="3.4.2">matplotlib</requirement> | |
| 5 <requirement type="package" version="1.20.2">numpy</requirement> | |
| 6 <requirement type="package" version="1.2.4">pandas</requirement> | |
| 7 <requirement type="package" version="0.11.1">seaborn</requirement> | |
| 8 </requirements> | |
| 9 | |
| 10 <command interpreter="perl">roary_plots.sh $tree $input $heatmap | |
| 11 </command> | |
| 12 | |
| 13 | |
| 14 <inputs> | |
| 15 <param format="tabular" name="input" type="data" label="Gene Presence Absence matrix"/> | |
| 16 <param format="newick" name="tree" type="data" label="Newick"/> | |
| 17 | |
| 18 </inputs> | |
| 19 | |
| 20 <outputs> | |
| 21 <data format="png" name="heatmap" label="Heatmap tree"/> | |
| 22 </outputs> | |
| 23 | |
| 24 <help> | |
| 25 For full documentation, please go to the Roary plots website : https://github.com/sanger-pathogens/Roary/tree/master/contrib/roary_plots | |
| 26 | |
| 27 </help> | |
| 28 | |
| 29 </tool> |