Mercurial > repos > dereeper > roary_plots
diff Roary/t/00_requires_external.t @ 0:c47a5f61bc9f draft
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author | dereeper |
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date | Fri, 14 May 2021 20:27:06 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Roary/t/00_requires_external.t Fri May 14 20:27:06 2021 +0000 @@ -0,0 +1,20 @@ +#!/usr/bin/env perl + +use Test::Most; +use FindBin; +plan tests => 8; +bail_on_fail if 0; +use Env::Path 'PATH'; + + +my $OPSYS = $^O; +my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; + +for my $dir ($BINDIR, $FindBin::RealBin) { + if (-d $dir) { + $ENV{PATH} .= ":$dir"; + } +} + +ok(scalar PATH->Whence($_), "$_ in PATH") for qw(blastp makeblastdb mcl mcxdeblast bedtools prank parallel mafft); +