Mercurial > repos > dereeper > roary_plots

diff roary_plots.sh @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/roary_plots.sh	Fri May 14 20:27:06 2021 +0000
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+tool_path=$(dirname $0)
+input=$2
+tree=$1
+heatmap=$3
+
+python3 $tool_path/Roary/contrib/roary_plots/roary_plots.py --labels $tree $input
+
+cp -rf pangenome_matrix.png $heatmap