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view Roary/t/data/expected_group_statitics_verbose.csv @ 1:997f4f276c1c draft

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author dereeper
date Fri, 14 May 2021 20:42:33 +0000
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"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa","query_2.fa","query_3.fa","Inference"
"hly","","Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein","3","3","1","","","","","","959","959","959","1_1","2_1","3_1","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6"
"speH","","hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain","2","2","1","","","","","","725","725","725","1_2","2_2","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11"
"argF","","Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain","2","2","1","","","","","","1001","1001","1001","1_3","","3_3","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1"
"group_4","","","2","2","1","","","","","","","","","","2_4","3_4",
"yfnB","","Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase","1","1","1","","","","","","686","686","686","","","3_5","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1"
"group_6","","Gonococcal growth inhibitor III,Staphylococcus haemolytic protein","1","1","1","","","","","","134","134","134","1_6","","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5"
"group_7","","Gonococcal growth inhibitor III,Staphylococcus haemolytic protein","1","1","1","","","","","","134","134","134","","2_7","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5"