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view Roary/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t @ 0:c47a5f61bc9f draft
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author | dereeper |
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date | Fri, 14 May 2021 20:27:06 +0000 |
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#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::RoaryReorderSpreadsheet'); } my $script_name = 'Bio::Roary::CommandLine::RoaryReorderSpreadsheet'; system('touch empty_file'); my %scripts_and_expected_files = ( '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -o different_output_name.csv' => [ 'different_output_name.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -f newick' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b height' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_height.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b creation' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_creation.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b alpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_alpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b revalpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_revalpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b height' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_height.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b creation' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_creation.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b alpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_alpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b revalpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_revalpha.csv' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); done_testing();