Mercurial > repos > dereeper > roary_plots
view roary_plots.xml @ 3:e95344f6dfc5 draft default tip
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author | dereeper |
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date | Fri, 12 Nov 2021 16:32:26 +0000 |
parents | 997f4f276c1c |
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<tool id="roary_plots" name="Roary plots" version="1.0"> <description>Generate plots from Roary outputs</description> <requirements> <requirement type="package" version="1.78">biopython</requirement> <requirement type="package" version="3.4.2">matplotlib</requirement> <requirement type="package" version="1.20.2">numpy</requirement> <requirement type="package" version="1.2.4">pandas</requirement> <requirement type="package" version="0.11.1">seaborn</requirement> </requirements> <command>${__tool_directory__}/Roary/contrib/roary_plots/roary_plots.py --labels $tree $input ;cp pangenome_matrix.png $heatmap; cp -rf pangenome_frequency.png $frequency; cp -rf pangenome_pie.png $pie</command> <inputs> <param format="csv" name="input" type="data" label="Gene Presence Absence matrix"/> <param format="newick" name="tree" type="data" label="Newick"/> </inputs> <outputs> <data format="png" name="heatmap" label="Pangenome matrix tree"/> <data format="png" name="frequency" label="Pangenome frequency"/> <data format="png" name="pie" label="Pangenome pie"/> </outputs> <help> For full documentation, please go to the Roary plots website : https://github.com/sanger-pathogens/Roary/tree/master/contrib/roary_plots </help> </tool>