annotate ped2bed/ped2bed.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
parents
children
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1 #!/bin/bash
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2 ped=$1
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3 map=$2
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4 bed=$3
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5 fam=$4
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6 bim=$5
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7 logs=$6
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8
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9 directory=`dirname $0`
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10 mkdir tmpdir$$
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11 cp -rf $ped tmpdir$$/input.ped
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12 cp -rf $map tmpdir$$/input.map
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14 plink --file tmpdir$$/input --out tmpdir$$/out --make-bed --noweb >>$logs 2>&1
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16 mv tmpdir$$/out.bed $bed
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17 mv tmpdir$$/out.fam $fam
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18 mv tmpdir$$/out.bim $bim
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