Mercurial > repos > dereeper > sniplay

comparison hapmap2mlmm/HapmapToMLMMFiles.xml @ 4:10627af23f10 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author gandres
date Tue, 15 Dec 2015 05:18:02 -0500
parents 420b57c3c185
children
comparison
equal deleted inserted replaced
3:345f88a8f483 4:10627af23f10
1 <tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1"> 1 <tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1">
2 <description>converts a hapmap file into MLMM input files</description> 2 <description>converts a hapmap file into MLMM input files</description>
3 <command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot 3 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
4 <stdio>
5 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
6 <exit_code range="1:" level="fatal" />
7 </stdio>
8 <command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot
4 </command> 9 </command>
5 <inputs> 10 <inputs>
6 <param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/> 11 <param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/>
7 </inputs> 12 </inputs>
8 <outputs> 13 <outputs>
9 <data format="txt" name="snp_info" label="SNP Info file"/> 14 <data format="txt" name="snp_info" label="SNP Info file"/>
10 <data format="txt" name="genot" label="Genotyping file for MLMM"/> 15 <data format="txt" name="genot" label="Genotyping file for MLMM"/>
11 </outputs> 16 </outputs>
12 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
13 <stdio>
14 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
15 <exit_code range="1:" level="fatal" />
16 </stdio>
17 17
18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> 18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
19 <tests> 19 <tests>
20 <!-- [HELP] Test files have to be in the ~/test-data directory --> 20 <!-- [HELP] Test files have to be in the ~/test-data directory -->
21 <!-- [HELP] Multiple tests can be defined with different parameters --> 21 <!-- [HELP] Multiple tests can be defined with different parameters -->
22 <!-- 22
23 <test> 23 <test>
24 <param name="input" value="hapmap2mlmm-hapmap" />
25 <output name="snp_info" file="hapmap2mlmm-result_snp.hapmap" />
26 <output name="genot" file="hapmap2mlmm-result_genot" />
24 </test> 27 </test>
25 -->
26 </tests> 28 </tests>
27 <help> 29 <help>
28 30
29 31
30 32