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comparison Rooting/rooting.xml @ 11:15b23cdde685 draft

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planemo upload commit 305985afd3b7c3d47f531149c2f1a279af2d12aa-dirty
author dereeper
date Fri, 20 Apr 2018 09:04:25 -0400
parents c6640c49fd01
children
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10:c6640c49fd01 11:15b23cdde685
28 Rooting.pl -i $filein -o $fileout && mv ${filein}.rooting.log $fileout_log 28 Rooting.pl -i $filein -o $fileout && mv ${filein}.rooting.log $fileout_log
29 </command> 29 </command>
30 30
31 <!-- [REQUIRED] Input files and tool parameters --> 31 <!-- [REQUIRED] Input files and tool parameters -->
32 <inputs> 32 <inputs>
33 <param name="filein" type="data" format="nwk,nhx" optional="false" label="Newick tree input" /> 33 <param name="filein" type="data" format="nhx" optional="false" label="Newick tree input" />
34 <param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" /> 34 <param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" />
35 </inputs> 35 </inputs>
36 36
37 <!-- [REQUIRED] Output files --> 37 <!-- [REQUIRED] Output files -->
38 <outputs> 38 <outputs>
39 <data name="fileout_log" format="txt" label="${fileout_label}.log" /> 39 <data name="fileout_log" format="txt" label="${fileout_label}.log" />
40 <data name="fileout" format="nwk,nhx" label="${fileout_label}" /> 40 <data name="fileout" format="nhx" label="${fileout_label}" />
41 </outputs> 41 </outputs>
42 42
43 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> 43 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
44 <tests> 44 <tests>
45 <!-- [HELP] Test files have to be in the ~/test-data directory --> 45 <!-- [HELP] Test files have to be in the ~/test-data directory -->