Mercurial > repos > dereeper > sniplay
comparison MDSplot/mdsplot.sh @ 0:3e19d0dfcf3e draft
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| author | dereeper |
|---|---|
| date | Mon, 23 Mar 2015 05:57:27 -0400 |
| parents | |
| children | 10627af23f10 |
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| -1:000000000000 | 0:3e19d0dfcf3e |
|---|---|
| 1 #!/bin/bash | |
| 2 | |
| 3 tool_path=$(dirname $0) | |
| 4 ped=$1 | |
| 5 map=$2 | |
| 6 fileout_label=$3 | |
| 7 fileout_matrix=$4 | |
| 8 fileout_plot=$5 | |
| 9 fileout_log=$6 | |
| 10 | |
| 11 rsync -a $ped input.ped | |
| 12 rsync -a $map input.map | |
| 13 | |
| 14 perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label | |
| 15 | |
| 16 rm -f input.ped input.map | |
| 17 | |
| 18 cp $fileout_label.ibs_matrix.txt $fileout_matrix | |
| 19 cp $fileout_label.mds_plot.txt $fileout_plot | |
| 20 cp input.plink.log $fileout_log | |
| 21 | |
| 22 | |
| 23 rm -f $fileout_label.ibs_matrix.txt $fileout_label.mds_plot.txt input.plink.log |