Mercurial > repos > dereeper > sniplay

comparison SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 6:ebb0ac9b6fa9 draft

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planemo upload
author gandres
date Mon, 23 May 2016 17:49:17 -0400
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5:ec22fcacb66c 6:ebb0ac9b6fa9
1 #!/bin/bash
2
3 tool_path=$(dirname $0)
4 input=$1
5 fileout=$2
6 fileout_bysample=$3
7 step=$4
8
9 perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step
10
11 cp $fileout.by_sample $fileout_bysample
12 rm $fileout.by_sample
13