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comparison check_gwas_inputs/CheckGWASInputs.xml @ 5:ec22fcacb66c draft

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planemo upload
author gandres
date Mon, 15 Feb 2016 10:26:18 -0500
parents 10627af23f10
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4:10627af23f10 5:ec22fcacb66c
1 <tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="1.0"> 1 <tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="1.1">
2 <description>checks concordance between input files for GWAS analysis</description> 2 <description>checks concordance between input files for GWAS analysis</description>
3 3
4 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> 4 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
5 <requirements> 5 <requirements>
6 <requirement type="binary">perl</requirement> 6 <requirement type="binary">perl</requirement>
13 </stdio> 13 </stdio>
14 14
15 <command interpreter="bash">./CheckGWASInputs.sh $hapmap $trait $out_hapmap $out_trait $stats 15 <command interpreter="bash">./CheckGWASInputs.sh $hapmap $trait $out_hapmap $out_trait $stats
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param format="text" name="hapmap" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/> 18 <param format="txt" name="hapmap" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/>
19 <param format="text" name="trait" type="data" label="Trait file" help="Phenotypic file"/> 19 <param format="txt" name="trait" type="data" label="Trait file" help="Phenotypic file"/>
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data format="txt" name="out_hapmap" label="Hapmap output"/> 22 <data format="txt" name="out_hapmap" label="Hapmap output"/>
23 <data format="txt" name="out_trait" label="Trait output"/> 23 <data format="txt" name="out_trait" label="Trait output"/>
24 <data format="txt" name="stats" label="Logfile and statistics"/> 24 <data format="txt" name="stats" label="Logfile and statistics"/>