--- a/Rooting/rooting.xml	Fri Jul 10 10:38:43 2015 -0400
+++ b/Rooting/rooting.xml	Tue Dec 15 05:18:02 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="sniplay_rooting" name="Rooting" version="1.1">
+<tool id="sniplay_rooting" name="Rooting" version="1.0.2">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Midpoint rooting of newick tree </description>
@@ -8,6 +8,13 @@
         <requirement type="binary">perl</requirement>
 	<requirement type="package">Rootings_54.jar</requirement>
     </requirements>
+
+    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
+    <stdio>
+            <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
+        <exit_code range="1:" level="fatal" />
+    </stdio>
+
     
     <!-- [OPTIONAL] Command to be executed to get the tool's version string -->
     <version_command>
@@ -23,7 +30,7 @@
    
     <!-- [REQUIRED] Input files and tool parameters -->
     <inputs>
-	<param name="filein" type="data" format="txt" optional="false" label="Newick tree input" />
+	<param name="filein" type="data" format="txt" optional="false" label="Fasta alignment input" />
 	<param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" />
     </inputs> 
     
@@ -33,20 +40,13 @@
 	<data name="fileout" type="data" format="txt" label="${fileout_label}" />
     </outputs>
     
-    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
-    <stdio>
-        <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
-        <exit_code range="1:" level="fatal" />
-    </stdio>
-    
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
     <tests>
         <!-- [HELP] Test files have to be in the ~/test-data directory -->
 
         <test>
-         <param name="filein" value="newick" />
-         <output name="fileout" file="out_tree" />
-	 <output name="fileout_log" file="out_tree.log" />
+         <param name="filein" value="rooting-newick" />
+         <output name="fileout" file="rooting-out_tree" />
         </test>
 
         <!-- [HELP] Multiple tests can be defined with different parameters -->