Mercurial > repos > dereeper > sniplay
diff SNP_density/calculateSlidingWindowsSNPdensitiesFromHapMap_wrapper.xml @ 4:10627af23f10 draft
planemo upload
author | gandres |
---|---|
date | Tue, 15 Dec 2015 05:18:02 -0500 |
parents | 420b57c3c185 |
children | ec22fcacb66c |
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--- a/SNP_density/calculateSlidingWindowsSNPdensitiesFromHapMap_wrapper.xml Fri Jul 10 10:38:43 2015 -0400 +++ b/SNP_density/calculateSlidingWindowsSNPdensitiesFromHapMap_wrapper.xml Tue Dec 15 05:18:02 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="sniplay_density" name="SNP density" version="1.2.0"> +<tool id="sniplay_density" name="SNP density" version="1.3.0"> <!-- [REQUIRED] Tool description displayed after the tool name --> <description> Calculate SNP densities along chromosome from HapMap</description> @@ -8,6 +8,12 @@ <requirement type="binary">perl</requirement> </requirements> + <!-- [STRONGLY RECOMMANDED] Exit code rules --> + <stdio> + <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> + <exit_code range="1:" level="fatal" /> + </stdio> + <!-- [OPTIONAL] Command to be executed to get the tool's version string --> <version_command> <!-- @@ -19,7 +25,7 @@ <command interpreter="bash"> calculateSlidingWindowsSNPdensitiesFromHapmap.sh $filein $fileout $fileout_bysample $step </command> - + <!-- [REQUIRED] Input files and tool parameters --> <inputs> <param name="filein" type="data" format="txt" optional="false" label="Hapmap input" /> @@ -32,22 +38,14 @@ <data name="fileout" type="data" format="tabular" label="${fileout_label}" /> <data name="fileout_bysample" type="data" format="tabular" label="${fileout_label}.by_sample" /> </outputs> - - <!-- [STRONGLY RECOMMANDED] Exit code rules --> - <stdio> - <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> - <exit_code range="1:" level="fatal" /> - </stdio> - - <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> + <tests> - <!-- [HELP] Test files have to be in the ~/test-data directory --> -<!-- - <test> - <param name="input" value="input_test.txt" /> - <output name="output" file="output_test.txt" /> + <test> + <param name="filein" value="SNPden-hapmap" /> + <param name="step" value="200000" /> + <output name="fileout" file="SNPden-result.txt" /> + <output name="fileout_bysample" file="SNPden-result_bysample.txt" /> </test> ---> <!-- [HELP] Multiple tests can be defined with different parameters --> <!-- <test>