Mercurial > repos > dereeper > sniplay

diff VCF2Hapmap/vcf2FastaAndHapmap.sh @ 4:10627af23f10 draft

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planemo upload
author gandres
date Tue, 15 Dec 2015 05:18:02 -0500
parents 420b57c3c185
children
line wrap: on
line diff
--- a/VCF2Hapmap/vcf2FastaAndHapmap.sh	Fri Jul 10 10:38:43 2015 -0400
+++ b/VCF2Hapmap/vcf2FastaAndHapmap.sh	Tue Dec 15 05:18:02 2015 -0500
@@ -5,19 +5,19 @@
 
 
 filein=$1
-fileout_label=$2
-fileout=$3
-option=$4
+fileout_label=$(date "+%Y%m%d%H%M%S")
+fileout=$2
+option=$3
 
 option_text=''
 
 
 if [ "$option" != "none" ]
-then fileout_seq=$5 
-	fileout_fa1=$6 
-	filefasta=$7
+then fileout_seq=$4 
+	fileout_fa1=$5 
+	filefasta=$6
 	if [ "$option" == "fasta_gff" ]
-		then filegff=$8
+		then filegff=$7
 	fi
 fi